CK940096

Overview
NameCK940096
Unique NameCK940096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_NEUCR (40S ribosomal protein S29 OS=Neurospora crassa GN=rps-29 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 3.862e-11
Identity = 24/39 (61.54%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 246
            SR+CRVC +   +IRKYGL  CRQCFR  A +IGF K+R
Sbjct:   18 SRSCRVCTHSAGLIRKYGLNICRQCFREKANDIGFTKHR 56          

HSP 2 Score: 30.0314 bits (66), Expect = 3.862e-11
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            M H +VWNS P+TYG
Sbjct:    1 MSHESVWNSRPRTYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_LONON (40S ribosomal protein S29 OS=Lonomia obliqua GN=RpS29 PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.016e-11
Identity = 24/37 (64.86%), Postives = 27/37 (72.97%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            SR+CR C N H +IRKYGL  CRQCFR  A +IGF K
Sbjct:   18 SRSCRACSNRHGLIRKYGLNICRQCFREYAHDIGFKK 54          

HSP 2 Score: 29.6462 bits (65), Expect = 5.016e-11
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTY 121
            MGH+N+W SHP+ Y
Sbjct:    1 MGHANIWYSHPRRY 14          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_MAGGR (40S ribosomal protein S29 OS=Magnaporthe grisea GN=RPS29 PE=3 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.515e-11
Identity = 24/39 (61.54%), Postives = 30/39 (76.92%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVKYR 246
            +R+CRVC +   +IRKYGL  CRQCFR  A +IGFVK+R
Sbjct:   18 ARSCRVCTHRAGLIRKYGLDICRQCFREKAADIGFVKHR 56          

HSP 2 Score: 30.0314 bits (66), Expect = 6.515e-11
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            M H +VWNS P+TYG
Sbjct:    1 MSHDSVWNSRPRTYG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_ICTPU (40S ribosomal protein S29 OS=Ictalurus punctatus GN=rps29 PE=3 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 8.461e-11
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            SR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:   18 SRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          

HSP 2 Score: 22.7126 bits (47), Expect = 8.461e-11
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGH  ++ SHP+ +G
Sbjct:    1 MGHQQLYWSHPRKFG 15          
BLAST of CK940096 vs. ExPASy Swiss-Prot
Match: RS29_HIPCM (40S ribosomal protein S29 OS=Hippocampus comes GN=rps29 PE=3 SV=3)

HSP 1 Score: 63.1586 bits (152), Expect = 8.461e-11
Identity = 27/37 (72.97%), Postives = 30/37 (81.08%), Query Frame = 1
Query:  130 SRACRVCGNPHAIIRKYGLMCCRQCFRSNAKEIGFVK 240
            SR+CRVC N H +IRKYGL  CRQCFR  AK+IGFVK
Sbjct:   18 SRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFVK 54          

HSP 2 Score: 22.7126 bits (47), Expect = 8.461e-11
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 2
Query:   80 MGHSNVWNSHPKTYG 124
            MGH  ++ SHP+ +G
Sbjct:    1 MGHQQLYWSHPRKFG 15          
The following BLAST results are available for this feature:
BLAST of CK940096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RS29_NEUCR3.862e-1161.5440S ribosomal protein S29 OS=Neurospora crassa GN=... [more]
RS29_LONON5.016e-1164.8640S ribosomal protein S29 OS=Lonomia obliqua GN=Rp... [more]
RS29_MAGGR6.515e-1161.5440S ribosomal protein S29 OS=Magnaporthe grisea GN... [more]
RS29_ICTPU8.461e-1172.9740S ribosomal protein S29 OS=Ictalurus punctatus G... [more]
RS29_HIPCM8.461e-1172.9740S ribosomal protein S29 OS=Hippocampus comes GN=... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_F08 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_F08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940096 ID=CK940096; Name=CK940096; organism=Citrus sinensis; type=EST; length=474bp
GGGGACAATTAGCATTTGCATTGCGGAGAAGAGTGCGGCAGCAGAGCAGA
GCAGAGCAGGACAGGACAGGAGAGAAGAGATGGGTCACTCCAACGTATGG
AATTCGCATCCCAAGACCTACGGCCCTGATCTCGTGCTTGCCGCGTTTGC
GGGAACCCTCATGCGATTATCAGAAAGTACGGCCTCATGTGCTGCAGGCA
GTGCTTCCGCAGCAACGCCAAGGAGATCGGTTTCGTCAAGTACCGCTGAA
GAAGATGGCTGTCAAGGCTTTGCAGTGGACTGTGGAGCATACCTAGGAAT
GGAGAAATTTTCAGTTTTCATGTGATTTCTTTTTAGTTTTTCACAAGTAG
CATAAAGCTTGTGAATCAATTAGAGCTTGAACTTTGTAGATGGATTTCTT
TGCTGTCTTAATATGACTGCCAATCTTATTACTTTAATGTTCTAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
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