CN188541

Overview
NameCN188541
Unique NameCN188541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:78..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_PONAB (60S ribosomal protein L31 OS=Pongo abelii GN=RPL31 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.473e-23
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = -1
Query:  202 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVID 549
            +K G+    EVVTREYTIN+HKR+HG  FKK+AP+A+KEIRKFA K MGT DVR+D +LNK VW+                 RN++ED+  + Y+LVT   +P    K L T  +D
Sbjct:   10 KKKGRSAINEVVTREYTINIHKRIHGVGFKKRAPRALKEIRKFAMKEMGTPDVRIDTRLNKAVWAKGIRNVPYRIRVRLSRKRNEDEDSPNKLYTLVTY--VPVTTFKNLQTVNVD 123          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_DROME (60S ribosomal protein L31 OS=Drosophila melanogaster GN=RpL31 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 6.090e-22
Identity = 56/122 (45.90%), Postives = 73/122 (59.84%), Query Frame = -1
Query:  193 TMVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 558
            T  EK  K    EVVTRE TI+L KR+H   FKK+AP+AIKEIRKFA++ MGTTDVR+D +LNK +WS                 RND+ED+  + Y+ VT   +P    K L T+ ++  D
Sbjct:    4 TKGEKINKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFAEREMGTTDVRIDTRLNKHIWSKGIRSTPFRIRVRLARRRNDDEDSPNKLYTYVTY--VPVSTFKNLQTENVESSD 123          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_DICDI (60S ribosomal protein L31 OS=Dictyostelium discoideum GN=rpl31 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 51/106 (48.11%), Postives = 70/106 (66.04%), Query Frame = -1
Query:  205 EVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVI 522
            E VTREYTINLHKRL+G TFK +APKA+K+++ FAQK MGT DVR+D KLNK +WS                 RN++E+A E+ Y++ ++  +  +  KGL TK +
Sbjct:    5 EAVTREYTINLHKRLYGTTFKDRAPKAVKQVKLFAQKIMGTKDVRIDNKLNKFLWSQGIKNVPHRVRVTLSRKRNEDENATEKLYTVASLVIV--KSFKGLQTKKV 108          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_ASHGO (60S ribosomal protein L31 OS=Ashbya gossypii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.149e-20
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  193 EEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 525
            ++VVTREYTINLHKRLHG TFKK+AP+A+KEI+KFA+  MGT DVR+D +LN ++W                  RN+E+ A    +S V    +     KGL T V++EE+
Sbjct:    5 KDVVTREYTINLHKRLHGVTFKKRAPRAVKEIKKFAKLHMGTEDVRLDPRLNTEIWKRGVKGVPFRMRLRISRRRNEEDTAPPPLFSYVEPVVV--ASAKGLHTVVVEEEE 113          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_AEDAE (60S ribosomal protein L31 OS=Aedes aegypti GN=RpL31 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.959e-20
Identity = 53/124 (42.74%), Postives = 73/124 (58.87%), Query Frame = -1
Query:  193 ATTMVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 564
            A T  EK  K    EVVTRE TINL++RLH   +KK+AP+A+K +RKFA+K MGT DVR+D +LNK +W                  RND+ED+  + Y+LVT   +P    K L T+ ++  +
Sbjct:    2 AKTKTEKKAKSAINEVVTRECTINLNRRLHKVGYKKRAPRAVKIVRKFAEKEMGTNDVRIDTRLNKALWHRGIRNPPFRIRVRLSRRRNDDEDSPNKLYTLVTY--VPVSTFKELQTENVESTE 123          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_DROVI (60S ribosomal protein L31 OS=Drosophila virilis GN=RpL31 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 56/128 (43.75%), Postives = 73/128 (57.03%), Query Frame = -1
Query:  193 ATTMVEKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVW----SXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 564
            A T  EK  K    EVVTRE TI+L KR+H   FKK+AP+AIKEIRKF ++ MGT DVR+D +LNK +W    S                 RND+ED+  + Y+LVT   +P    K L T+ ++  D
Sbjct:    2 AKTKGEKRNKSAINEVVTRECTIHLAKRVHNIGFKKRAPRAIKEIRKFTEREMGTNDVRIDTRLNKHIWSKGISLRYRSTPFRVRVRLARRRNDDEDSPNKLYTLVTYVPVPT--FKNLQTENVESSD 127          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_CANGA (60S ribosomal protein L31 OS=Candida glabrata GN=RPL31 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = -1
Query:  196 EEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 525
            ++VVTREYTIN+HKRLHG +FKK+APKA+KEI+KFA+  MGT DVR+  +LN+++W                  RN+EE+AK   +S V    +     KGL T V++E+
Sbjct:    5 KDVVTREYTINMHKRLHGVSFKKRAPKAVKEIKKFAKLHMGTEDVRLAPELNQEIWKRGVKGVAFRLRLRISRKRNEEENAKNPLFSYVEPVFV--ASAKGLQTTVVEED 112          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31B_YEAST (60S ribosomal protein L31-B OS=Saccharomyces cerevisiae GN=RPL31B PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = -1
Query:  196 EEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 525
            ++VVTREYTINLHKRLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ +W                  RN+EEDAK   +S V    +     KGL T V++E+
Sbjct:    5 KDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTEDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLV--ASAKGLQTVVVEED 112          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31A_YEAST (60S ribosomal protein L31-A OS=Saccharomyces cerevisiae GN=RPL31A PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.559e-20
Identity = 52/110 (47.27%), Postives = 70/110 (63.64%), Query Frame = -1
Query:  196 EEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEE 525
            ++VVTREYTINLHKRLHG +FKK+AP+A+KEI+KFA+  MGT DVR+  +LN+ +W                  RN+EEDAK   +S V    +     KGL T V++E+
Sbjct:    5 KDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAPELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLV--ASAKGLQTVVVEED 112          
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_CAEEL (60S ribosomal protein L31 OS=Caenorhabditis elegans GN=rpl-31 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.335e-18
Identity = 50/119 (42.02%), Postives = 68/119 (57.14%), Query Frame = -1
Query:  193 EKAGKGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 549
            EK  +    EVVTREYTI++H R+ G   KK+AP+AI EI+KFA+  M T DVRVD KLNK +WS                 RN++ED+ ++ Y+L T   +P     GL    +D E+
Sbjct:    6 EKKSRSTINEVVTREYTIHIHARIRGIGSKKRAPRAIDEIKKFAKIQMKTNDVRVDTKLNKFIWSKGIKNVPYRVRVRLSRRRNEDEDSAQKLYTLCTY--VPCTNFHGLTNVNVDSEE 122          
The following BLAST results are available for this feature:
BLAST of CN188541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_PONAB2.473e-2348.2860S ribosomal protein L31 OS=Pongo abelii GN=RPL31... [more]
RL31_DROME6.090e-2245.9060S ribosomal protein L31 OS=Drosophila melanogast... [more]
RL31_DICDI1.149e-2048.1160S ribosomal protein L31 OS=Dictyostelium discoid... [more]
RL31_ASHGO1.149e-2046.8560S ribosomal protein L31 OS=Ashbya gossypii GN=RP... [more]
RL31_AEDAE1.959e-2042.7460S ribosomal protein L31 OS=Aedes aegypti GN=RpL3... [more]
RL31_DROVI2.559e-2043.7560S ribosomal protein L31 OS=Drosophila virilis GN... [more]
RL31_CANGA2.559e-2046.3660S ribosomal protein L31 OS=Candida glabrata GN=R... [more]
RL31B_YEAST2.559e-2047.2760S ribosomal protein L31-B OS=Saccharomyces cerev... [more]
RL31A_YEAST2.559e-2047.2760S ribosomal protein L31-A OS=Saccharomyces cerev... [more]
RL31_CAEEL5.335e-1842.0260S ribosomal protein L31 OS=Caenorhabditis elegan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188541 ID=CN188541; Name=CN188541; organism=Citrus sinensis; type=EST; length=600bp
TTTTTTTTTTTTTTTGAATGAAGTATCAGAAATCTTAAACAGGGCCATTT
GAGGAATCACAATACGTTCACGAAACCCTTTTTTGGCCCTTGGGAGTTCT
AAAAAGTAAATCCAAAACCAAAAAAGCAACTGAATAAGATAAAATTATAG
CCAAAATTTGGAGTTCCTTAGCTAAACAGAAAGGTTGCTTCAATCTTCCT
CATCAATGACCTTGGTGCCCAACCCCTTGAGTCCTTCTGGAGGGATCTCG
GCAACAGTGACGAGAGAGTAGAACTCTTCTTTGGCATCTTCCTCATCGTT
TCTCTTCCGTGCAACACGAACACGAATTCTCCTTGGTACACTACGGATAC
CACGGCTCCACACTTGCTTGTTGAGCTTCACATCCACCCTAACATCAGTT
GTCCCCATGGCTTTTTGAGCAAACTTCCTAATTTCCTTTATGGCTTTTGG
AGCTTTCTTCTTGAAGGTGCAGCCATGCAAGCGTTTGTGGAGATTAATGG
TATATTCGCGAGTGACGACCTCTTCTTTTCTTCCTTTACCAGCTTTCTCC
ACCATTGTTGTTGCTTCTTCTTTTTCTGCTCTCGAGCTTCTACACTCCCT
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