CN188541

Overview
NameCN188541
Unique NameCN188541
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:78..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188541 vs. ExPASy Swiss-Prot
Match: RL31_SCHPO (60S ribosomal protein L31 OS=Schizosaccharomyces pombe GN=rpl31 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 47/113 (41.59%), Postives = 67/113 (59.29%), Query Frame = -1 
Query:  199 KGRKEEVVTREYTINLHKRLHGCTFKKKAPKAIKEIRKFAQKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 537
            K    +VVTR+YTI++HKRL+G +FKK+AP+AIKEI  FAQK M T +VRVD  LNK+VW                  R+DE+D  +  Y+ V   ++    ++   T V++E
Sbjct:    6 KSAINQVVTRDYTIHMHKRLYGVSFKKRAPRAIKEIVAFAQKHMQTKEVRVDPSLNKEVWKRGIRNVPHRLRLRLSRKRSDEDD--KALYTYVQAVDVANPKME---TTVVEE 113
The following BLAST results are available for this feature:
BLAST of CN188541 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RL31_SCHPO1.898e-1541.5960S ribosomal protein L31 OS=Schizosaccharomyces p... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188541 ID=CN188541; Name=CN188541; organism=Citrus sinensis; type=EST; length=600bp
TTTTTTTTTTTTTTTGAATGAAGTATCAGAAATCTTAAACAGGGCCATTT
GAGGAATCACAATACGTTCACGAAACCCTTTTTTGGCCCTTGGGAGTTCT
AAAAAGTAAATCCAAAACCAAAAAAGCAACTGAATAAGATAAAATTATAG
CCAAAATTTGGAGTTCCTTAGCTAAACAGAAAGGTTGCTTCAATCTTCCT
CATCAATGACCTTGGTGCCCAACCCCTTGAGTCCTTCTGGAGGGATCTCG
GCAACAGTGACGAGAGAGTAGAACTCTTCTTTGGCATCTTCCTCATCGTT
TCTCTTCCGTGCAACACGAACACGAATTCTCCTTGGTACACTACGGATAC
CACGGCTCCACACTTGCTTGTTGAGCTTCACATCCACCCTAACATCAGTT
GTCCCCATGGCTTTTTGAGCAAACTTCCTAATTTCCTTTATGGCTTTTGG
AGCTTTCTTCTTGAAGGTGCAGCCATGCAAGCGTTTGTGGAGATTAATGG
TATATTCGCGAGTGACGACCTCTTCTTTTCTTCCTTTACCAGCTTTCTCC
ACCATTGTTGTTGCTTCTTCTTTTTCTGCTCTCGAGCTTCTACACTCCCT
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