CK940088

Overview
NameCK940088
Unique NameCK940088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: APMAP_MOUSE (Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.523e-33
Identity = 84/229 (36.68%), Postives = 128/229 (55.90%), Query Frame = 1
Query:  145 GPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGG---LATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            GPES     +G+  +TG +DGR++K  + +   +    + P +   +          E  CGRPLG+     NG L++ DAY GL +V P+     L  +  T  EG    F N L + +    +YFTDSSS++QRR+++ +++     GRL++YD  TK+V VLL+ L FPNGV LS + +++L+AETT  RI R ++    K G       +PGFPDN++ S  GG+
Sbjct:  100 GPESIV--NIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDD----------EPTCGRPLGIRAGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVTRDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEEDFVLVAETTMARIRRVYVSGLMKGGADMFVENMPGFPDNIRPSSSGGY 315          
BLAST of CK940088 vs. ExPASy Swiss-Prot
Match: APMAP_CHICK (Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.087e-32
Identity = 86/230 (37.39%), Postives = 126/230 (54.78%), Query Frame = 1
Query:  142 IGPESFAFDALGEGPYTGVSDGRIIKWHHDQRRWLHFALTSPNRDGCEGAYEYDHAAKEHICGRPLGLCFNKTNGDLYIADAYFGLLKVGPEGG---LATAVATQSEGIPFRFCNSLDIDQSTGIVYFTDSSSQFQRRNHISVILSGDKTGRLMKYDPATKQVTVLLENLSFPNGVALSEDGNYILLAETTSCRILRYWLK-TSKAGTIEXXAQLPGFPDNVKRSPRGGF 819
            +GPES     +G+  +TG +DG+I+K    + + +      P    C G  E      E  CGRPLG+     N  L++ADAY+GL +V P  G   +  +  T  EG    F N L + Q    +YFTDSSS++QRR+ + +++ G   GRL++YD  TK+V VL+  L FPNGV LS   +++L+ ET   RI RY++    K G       +PG PDN++ S  GG+
Sbjct:   99 VGPESIV--NIGDVLFTGTADGKILKIEDGEVQTVARIGHGP----C-GTPE-----DEPTCGRPLGIRVGPNN-TLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQDGRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAEDFVLVLETAMARIRRYYVSGLMKGGADMFVENMPGLPDNIRLSSSGGY 315          
The following BLAST results are available for this feature:
BLAST of CK940088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
APMAP_MOUSE3.523e-3336.68Adipocyte plasma membrane-associated protein OS=Mu... [more]
APMAP_CHICK5.087e-3237.39Adipocyte plasma membrane-associated protein OS=Ga... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004741_E10 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650003_IF_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK940088 ID=CK940088; Name=CK940088; organism=Citrus sinensis; type=EST; length=821bp
GGGGAATACCGTTTGTTTTTTCTCTCTATCACCATCACCATGAACTCAAC
AAGTCTCAGCTTCATCGCTAAAAGCATAGTCATTTTTCTTTTTATCAATA
GTTCTACTCAAGGTGTCGTTCAGTATCAGATAGAGGGTGCAATTGGACCT
GAAAGTTTTGCATTTGATGCACTTGGTGAGGGTCCTTATACCGGCGTATC
CGATGGCCGTATTATTAAATGGCACCACGACCAACGCCGCTGGCTTCATT
TTGCTCTAACCTCCCCAAACAGGGATGGTTGTGAAGGGGCATATGAATAC
GATCATGCGGCAAAGGAGCACATATGTGGGCGTCCGTTAGGGTTGTGCTT
CAATAAAACCAACGGTGATCTCTACATCGCTGACGCTTATTTTGGATTGC
TTAAAGTGGGACCCGAAGGAGGATTGGCCACTGCCGTTGCTACTCAATCA
GAGGGCATTCCTTTCAGATTCTGTAATAGTCTAGACATCGATCAATCCAC
CGGAATCGTCTATTTTACCGACAGCAGTTCACAGTTTCAAAGGAGGAACC
ACATTTCTGTAATACTAAGTGGTGATAAAACAGGAAGGCTAATGAAGTAT
GACCCAGCAACAAAACAAGTAACTGTTCTTCTTGAGAATCTCTCATTTCC
AAATGGGGTGGCTTTGAGTGAAGATGGCAACTACATATTACTTGCAGAGA
CAACAAGCTGCAGAATTCTAAGGTATTGGCTAAAAACATCGAAAGCCGGA
ACAATAGAAATNNTCGCTCAACTCCCAGGGTTTCCAGATAACGTAAAAAG
AAGCCCCAGAGGAGGATTTTG
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