CN188531

Overview
NameCN188531
Unique NameCN188531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 5.780e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDT++NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYCR (Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTI LEVESSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 7.549e-35
Identity = 74/76 (97.37%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.859e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 9.859e-35
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34
Identity = 73/76 (96.05%), Postives = 74/76 (97.37%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITL+VE SDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.411 bits (189), Expect = 7.346e-14
Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTLADYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.288e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVESSDTI+NVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.682e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = -1 
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 1.636e-13
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = -1 
Query:  432 PDQQRLILSGKQLEDGRTLADYNIQKESTLHLVLRLRGG 548
            PDQQRLI +GKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   38 PDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CN188531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
UBIQ_ACECL5.780e-3596.05Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_TRYCR7.549e-3597.37Ubiquitin OS=Trypanosoma cruzi PE=3 SV=1[more]
UBIQ_ACACA7.549e-3597.37Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY9.859e-3596.05Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL9.859e-3596.05Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
UBIQ_EUPEU1.288e-3496.05Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_AGLNE1.288e-3496.05Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA1.682e-3496.05Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR1.682e-3496.05Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_RAT1.682e-3496.05Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188531 ID=CN188531; Name=CN188531; organism=Citrus sinensis; type=EST; length=665bp
CGTTATAAGCGAAAAAGATTCTTAGATATTATAATGGGACCTTAGTGGGA
CCATATCAATATCTTAGAAACAGAGTTCAACTACCACAACCAAAATAAAC
TTCAAATAGTTATTTAAGCCATTTCACCAATAGCAAGCAAACATTAACCA
AGACAAACCGAAGCAAATAAGACACACACACACCCAGATGACCAAACTCA
GAAACCTCCACGGAGACGGAGCACAAGATGCAGAGTGGACTCCTTCTGGA
TGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTGTTTTCCAGCAAAG
ATCAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGGATCTTAGC
CTTCACATTGTCAATTGTGTCCGAACTCTCAACCTCCAATGTGATGGTTT
TCCCAGTGAGTGTCTTCACAAAAATCTGCATACCACCACGGAGGCGAAGA
ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCT
TCCATCTTCAAGCTGCTTTCCAGACAAAATGAGCCTCTGCTGATCTGGAA
CAAGCTGGGCTCAAAAGATTGCGGGAACTTGTTTTGGTGGGATTACCTAA
AGTTCTTACCATATGGAAAGGGAACCATTCAGTTGTATACCCCAAGACCC
TCAAGTTGATGAAAG
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