CN188531

Overview
NameCN188531
Unique NameCN188531
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBL1_SCHPO (Ubiquitin-like protein 1 OS=Schizosaccharomyces pombe GN=ubl1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.162e-17
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = -1
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            M I VKTLTGK I L+++ +D +  +K ++++KEGIPP QQRLI+AGKQ+ D +    Y+++  S LHLVL LRGG
Sbjct:    1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76          
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: RUB1_YEAST (NEDD8-like protein RUB1 OS=Saccharomyces cerevisiae GN=RUB1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.025e-15
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            M + VKTLTGK I++E++ SD + ++K  +++KEGIPP QQRLIF GKQ++D  T+ D ++ +   LHLVL LRGG
Sbjct:    1 MIVKVKTLTGKEISVELKESDLVYHIKELLEEKEGIPPSQQRLIFQGKQIDDKLTVTDAHLVEGMQLHLVLTLRGG 76          
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBD_HUMAN (Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 46/123 (37.40%), Postives = 69/123 (56.10%), Query Frame = -1
Query:  204 VPDQQRLILSG-KQLEDGRTLADYNIQKESTLHLVLRL----RGGMQIFVKTL--TGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 551
            VP Q +++L G K L+  R+L+ Y I KE T+HL L++       + +F+       K   L+V  S ++  VKA I+ K GI P+ Q +   GK+LEDG+ +ADY I+K + L L     GG
Sbjct:   43 VPVQDQVLLLGSKILKPRRSLSSYGIDKEKTIHLTLKVVKPSDEELPLFLVESGDEAKRHLLQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCIGG 165          
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.457e-11
Identity = 36/76 (47.37%), Postives = 50/76 (65.79%), Query Frame = -1
Query:  204 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 431
            M++F++TLTG    L V   +T+ +VKAKI+  EGIP  +Q LI+   +LE+   L DYNI +  TL LVL +RGG
Sbjct:   28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYNISEGCTLKLVLAMRGG 103          
BLAST of CN188531 vs. ExPASy Swiss-Prot
Match: UBD_RAT (Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 41/118 (34.75%), Postives = 62/118 (52.54%), Query Frame = -1
Query:  204 QRLILSGKQLEDGRTLADYNIQKESTLHLVLRL------RGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 539
            Q L+L  K L+  R L+ Y I KE+T+HL L++         + +      G+   L V  S ++  VK  I++   +PP +Q +   GK+LEDG+ +ADYNI+  S L L     GG
Sbjct:   44 QILLLDSKILKPHRALSSYGIDKENTIHLTLKVVKPSDEELPLSLVESGDEGQRHLLRVRRSSSVAQVKEMIENVTAVPPKKQIVNCNGKRLEDGKIMADYNIKSGSLLFLTAHCIGG 161          
The following BLAST results are available for this feature:
BLAST of CN188531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 95
Match NameE-valueIdentityDescription
UBL1_SCHPO4.162e-1752.63Ubiquitin-like protein 1 OS=Schizosaccharomyces po... [more]
RUB1_YEAST1.025e-1552.63NEDD8-like protein RUB1 OS=Saccharomyces cerevisia... [more]
UBD_HUMAN2.613e-1137.40Ubiquitin D OS=Homo sapiens GN=UBD PE=1 SV=2[more]
ANUB1_HUMAN4.457e-1147.37AN1-type zinc finger and ubiquitin domain-containi... [more]
UBD_RAT7.602e-1134.75Ubiquitin D OS=Rattus norvegicus GN=Ubd PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006E01_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188531 ID=CN188531; Name=CN188531; organism=Citrus sinensis; type=EST; length=665bp
CGTTATAAGCGAAAAAGATTCTTAGATATTATAATGGGACCTTAGTGGGA
CCATATCAATATCTTAGAAACAGAGTTCAACTACCACAACCAAAATAAAC
TTCAAATAGTTATTTAAGCCATTTCACCAATAGCAAGCAAACATTAACCA
AGACAAACCGAAGCAAATAAGACACACACACACCCAGATGACCAAACTCA
GAAACCTCCACGGAGACGGAGCACAAGATGCAGAGTGGACTCCTTCTGGA
TGTTGTAATCAGCAAGAGTCCTTCCATCCTCAAGTTGTTTTCCAGCAAAG
ATCAACCTCTGCTGGTCTGGGGGAATCCCCTCCTTATCCTGGATCTTAGC
CTTCACATTGTCAATTGTGTCCGAACTCTCAACCTCCAATGTGATGGTTT
TCCCAGTGAGTGTCTTCACAAAAATCTGCATACCACCACGGAGGCGAAGA
ACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCT
TCCATCTTCAAGCTGCTTTCCAGACAAAATGAGCCTCTGCTGATCTGGAA
CAAGCTGGGCTCAAAAGATTGCGGGAACTTGTTTTGGTGGGATTACCTAA
AGTTCTTACCATATGGAAAGGGAACCATTCAGTTGTATACCCCAAGACCC
TCAAGTTGATGAAAG
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