CN188528
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.385e-29 Identity = 65/140 (46.43%), Postives = 96/140 (68.57%), Query Frame = -2 Query: 207 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 599 AAG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL + E Sbjct: 226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29 Identity = 65/142 (45.77%), Postives = 96/142 (67.61%), Query Frame = -2 Query: 207 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 605 S AG L+FLR+ PQFQ +R ++Q NP LL +LQ+LG++NPQL++ I HQ F++++NEP V+G G +G++ + IQVTP+E+EAIERL+A+GF ++V++ +FAC KNE LAAN+LL + E Sbjct: 223 STEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1) HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26 Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = -2 Query: 204 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 605 S G L FLR+ PQFQ LR +VQ NPQ+L+ +LQ++G+ +P L + I ++ FL+L+ E G EG G+ IQ+T EE E+I+RL +GFDR IV++ + AC+KNEELAANYL +H HE ED Sbjct: 239 SNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RAD23_DICDI (UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.233e-22 Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = -2 Query: 225 GSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLD 608 G G +G + LRN P F +LR + NP ++ +LQ+L + NP LVR IQE+ +F+RL G+GN G ++QVT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL + Sbjct: 217 GGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQ-----GDGNPGGNPGQF---TLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RAD23_YEAST (UV excision repair protein RAD23 OS=Saccharomyces cerevisiae GN=RAD23 PE=1 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11 Identity = 55/176 (31.25%), Postives = 84/176 (47.73%), Query Frame = -2 Query: 222 DLFPQGLP--DVGSGAAGA--GSLDFLRNSPQFQV---------LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------GDQLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL-DH 638 DLF Q + SGA G G+ D + P + LR +V NP+ L P+L+ + + PQL I + F+ ++ E V +G + + G+ A + Q + TPE+ +AI RL +GF+R +V++V+FAC+KNEE AAN L DH Sbjct: 221 DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396 The following BLAST results are available for this feature:
BLAST of CN188528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188528 ID=CN188528; Name=CN188528; organism=Citrus sinensis; type=EST; length=822bpback to top |