CN188528

Overview
NameCN188528
Unique NameCN188528
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length822
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.385e-29
Identity = 65/140 (46.43%), Postives = 96/140 (68.57%), Query Frame = -2
Query:  207 AAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 599
            AAG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  226 AAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.086e-29
Identity = 65/142 (45.77%), Postives = 96/142 (67.61%), Query Frame = -2
Query:  207 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 605
            S  AG   L+FLR+ PQFQ +R ++Q NP LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  223 STEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.445e-26
Identity = 64/134 (47.76%), Postives = 88/134 (65.67%), Query Frame = -2
Query:  204 SGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 605
            S   G   L FLR+ PQFQ LR +VQ NPQ+L+ +LQ++G+ +P L + I ++   FL+L+ E   G EG       G+    IQ+T EE E+I+RL  +GFDR IV++ + AC+KNEELAANYL +H HE ED
Sbjct:  239 SNTVGDDPLGFLRSIPQFQQLRQIVQQNPQMLETILQQIGQGDPALAQAITQNPEAFLQLLAE---GAEGESALPSGGIQ---IQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RAD23_DICDI (UV excision repair protein RAD23 homolog OS=Dictyostelium discoideum GN=rcbA PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.233e-22
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = -2
Query:  225 GSGAAGAGSLDFLRNSPQFQVLRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAM-GFDRAIVLEVFFACNKNEELAANYLLD 608
            G G +G    + LRN P F +LR  +  NP ++  +LQ+L + NP LVR IQE+  +F+RL       G+GN G         ++QVT EE EAI+RL+A+ G D++ V+E +FAC+KNEEL A+YL +
Sbjct:  217 GGGGSGDNPFEALRNHPHFNLLREAISKNPSIIPGILQQLAQTNPALVRQIQENPNEFIRLFQ-----GDGNPGGNPGQF---TLQVTQEESEAIQRLQALTGMDKSTVIEAYFACDKNEELTASYLFE 337          
BLAST of CN188528 vs. ExPASy Swiss-Prot
Match: RAD23_YEAST (UV excision repair protein RAD23 OS=Saccharomyces cerevisiae GN=RAD23 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.902e-11
Identity = 55/176 (31.25%), Postives = 84/176 (47.73%), Query Frame = -2
Query:  222 DLFPQGLP--DVGSGAAGA--GSLDFLRNSPQFQV---------LRAMVQANPQLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV--------QGGEGNL--------GDQLAGLMPQS-------IQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL-DH 638
            DLF Q     +  SGA G   G+ D  +  P   +         LR +V  NP+ L P+L+ +  + PQL   I  +   F+ ++ E V        +G +  +        G+  A  + Q        +  TPE+ +AI RL  +GF+R +V++V+FAC+KNEE AAN L  DH
Sbjct:  221 DLFAQAAQGGNASSGALGTTGGATDAAQGGPPGSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIMANPEVFVSMLLEAVGDNMQDVMEGADDMVEGEDIEVTGEAAAAGLGQGEGEGSFQVDYTPEDDQAISRLCELGFERDLVIQVYFACDKNEEAAANILFSDH 396          
The following BLAST results are available for this feature:
BLAST of CN188528 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23A_HUMAN1.385e-2946.43UV excision repair protein RAD23 homolog A OS=Homo... [more]
RD23A_BOVIN3.086e-2945.77UV excision repair protein RAD23 homolog A OS=Bos ... [more]
RHP23_SCHPO2.445e-2647.76UV excision repair protein rhp23 OS=Schizosaccharo... [more]
RAD23_DICDI6.233e-2243.41UV excision repair protein RAD23 homolog OS=Dictyo... [more]
RAD23_YEAST2.902e-1131.25UV excision repair protein RAD23 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188528 ID=CN188528; Name=CN188528; organism=Citrus sinensis; type=EST; length=822bp
CTTTTTTTTGAGATGTTCATCTTGCATTACTTGTTCACTCTCCACACATA
CCATAGCATGAATATCTGAACTTTGTTTAACAAATGAAGTCCAGGAGAAA
TGAGAAGGGAAAGAAACTAATTAGAGGTATTTTTTAATAAATGCCGTCCA
AAGGTAGTAACCATCATTTTCATCTTGAATCTTTTCTATTCCCCTTTCAA
TCAATCCTCAAACTCATGCATATGGTCTAAAAGGTAGTTGGCAGCAAGTT
CCTCATTCTTGTTGCAGGCAAAGAACACCTCCAATACAATTGCTCGATCA
AAGCCCATTGCCTCAAGACGTTCTATGGCTTCACGTTCTTCGGGCGTGAC
TTGTATTGACTGTGGCATTAACCCAGCAAGCTGGTCCCCCAAATTCCCCT
CACCACCTTGAACAGGTTCATTGATAAGCCGAAGGAAGTCAGCCTGATGT
TCCTGAATAAGCCTCACTAGCTGAGGATTTTGTTTCCCCAACTCTTGAAG
CATGGGCTGCAATAATTGAGGATTTGCCTGCACCATAGCTCGCAAAACTT
GAAACTGTGGACTATTACGTAAAAAGTCAAGACTGCCAGCGCCAGCTGCA
CCTGAACCCACGTCAGGAAGGCCCTGAGGAAAGAGGTCCAAAGGATTTGC
ATTTGGCCCACTAGAAGTAACGGGTGCCGGTTGGGTTGGCTGTGGCATCT
GAGTTGGAGAGTTAGCAGCTTGTCCATTACCAGGGGCGCGGGCCACAGGT
TGAACTTCAGCTTGCTCAGGTATACCCTGATAGTTTAAATAGAAAATTTG
GAGGGGGGGGAAAAATAAAAAA
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