CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 6.347e-46
Identity = 96/159 (60.38%), Postives = 112/159 (70.44%), Query Frame = 3
Query:  255 ASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            AS +  +   +VT+KVYFDV I    GK AGR+VIGL+G  VP+TAENFRALCTGEKG G       YKGS FHR+I  FMIQ             SIYG+ F DENFKL H GPGV+SMAN+G +TNGSQFFI TV T WLD RHVVFG+V++GMD+V
Sbjct:   19 ASIQAKEDLKEVTHKVYFDVEID---GKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKVVQGMDVV 174          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.289e-46
Identity = 93/142 (65.49%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT KVYFD+ IG+   +  GR+V GL+G  VP+T +NF AL TGEKGFGYK S FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+VLEGMD+V
Sbjct:   41 KVTVKVYFDLQIGD---ESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVV 179          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 98/160 (61.25%), Postives = 112/160 (70.00%), Query Frame = 3
Query:  231 MGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +G   L   SAE A    K+T+KVYFD+  G+   K  GRIV+GLYG  VP+TAENFRAL TGEKGFGY+GSTFHRVIK FMIQ             SIYG  F DENFKL H   G++SMANAG +TNGSQFFI TV T WLD +HVVFG+VLEG D+V
Sbjct:   15 LGAMLLFAQSAEAAK-GPKITHKVYFDIEQGD---KPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVV 170          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_BOVIN (Peptidyl-prolyl cis-trans isomerase B OS=Bos taurus GN=PPIB PE=1 SV=4)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 94/142 (66.20%), Postives = 105/142 (73.94%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT KVYFD+ IG+   +  GR+VIGL+G  VP+T +NF AL TGEKGFGYK S FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+VLEGMD+V
Sbjct:   41 KVTVKVYFDLRIGD---EDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMDVV 179          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.083e-45
Identity = 96/167 (57.49%), Postives = 115/167 (68.86%), Query Frame = 3
Query:  231 MGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +GT S ++A     +L+ ++T+KVYFDV I    GK AGRIV+GL+G  VP+T ENFRALCTGEKG G       YKGS+FHR+I  FM+Q             SIYG  F DENFKL H GPG +SMANAG +TNGSQFFI TV T WLD RHVVFG+V+ GMD+V
Sbjct:   15 LGTLSAIQAKKSKENLK-EITHKVYFDVEID---GKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKVVTGMDVV 177          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.414e-45
Identity = 94/155 (60.65%), Postives = 111/155 (71.61%), Query Frame = 3
Query:  249 VRASAEVADLQ-SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +R++ E+   Q S     VYFD+  GN   K  GR+V+GLYG  VP+TAENFRAL TGEKGFGY+GSTFHRVIK+FMIQ             SIYG  FKDENFK+ H   G++SMANAG +TNGSQFFI TV TPWLD RHVVFG+VLEG ++V
Sbjct:    4 LRSAEEITSQQYSSGLATVYFDIEHGN---KPLGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDENFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVV 155          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_DICDI (Peptidyl-prolyl cis-trans isomerase B OS=Dictyostelium discoideum GN=cypB PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.847e-45
Identity = 93/149 (62.42%), Postives = 105/149 (70.47%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K+TNKV+FD+ I N   K AGRIV GLYG  VP+T ENFRALCTGEKG G       YK S FHR+I +FMIQ             SIYG+ F DENFK+ H  PG++SMANAGPNTNGSQFFI TV T WLD RH VFG+V+EGMDIV
Sbjct:   27 KITNKVFFDIEIDN---KPAGRIVFGLYGKTVPKTVENFRALCTGEKGLGTSGKPLHYKDSKFHRIIPNFMIQGGDFTRGDGTGGESIYGKKFNDENFKIKHSKPGLLSMANAGPNTNGSQFFITTVVTSWLDGRHTVFGEVIEGMDIV 172          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.412e-45
Identity = 93/142 (65.49%), Postives = 105/142 (73.94%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K+T+KVYFD+      G+  GRIV+GLYG  VP+TAENFRAL TGEKGFGY+GSTFHRVIKDFMIQ             SIYG  F+DENFKL H   GV+SMANAG +TNGSQFFI T  T WLD +HVVFG+VLEG DIV
Sbjct:   32 KITSKVYFDIEHD---GQPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIV 170          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.150e-45
Identity = 91/137 (66.42%), Postives = 99/137 (72.26%), Query Frame = 3
Query:  300 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            VY DV      G+  GR+V+ L  D VP+TAENFRALCTGEKGFGYKGSTFHRVI  FM Q             SIYG  F DENFKL H GPGV+SMANAGPNTNGSQFFICT+KT WLD +HVVFG V EGMD+V
Sbjct:   49 VYLDVGAD---GQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVV 182          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 90/137 (65.69%), Postives = 99/137 (72.26%), Query Frame = 3
Query:  300 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            VY DV      G+  GR+V+ L  D VP+TAENFRALCTGEKGFGYKGSTFHRVI  FM Q             SIYG  F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WLD +HVVFG V EGMD+V
Sbjct:   47 VYLDVGAD---GQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVV 180          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
CP19D_ARATH6.347e-4660.38Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_MOUSE8.289e-4665.49Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIB_NEUCR1.083e-4561.25Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_BOVIN1.083e-4566.20Peptidyl-prolyl cis-trans isomerase B OS=Bos tauru... [more]
CP20A_ARATH1.083e-4557.49Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
PPIB_ASPOR1.414e-4560.65Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_DICDI1.847e-4562.42Peptidyl-prolyl cis-trans isomerase B OS=Dictyoste... [more]
PPIB_ARTBE2.412e-4565.49Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
PPIF_BOVIN3.150e-4566.42Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_RAT5.373e-4565.69Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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