CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_EMENI (Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans GN=cpr6 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 80/145 (55.17%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +V+FD+ IG    +  GRI   L+ D VP+TAENFRALCTGEKG G       +KGS FHRVIK FMIQ             SIYG  F DENF+L H  P ++SMAN+GP TNGSQFFI TV TP LD +HVVFG+V+ G  +V
Sbjct:    8 RVFFDIQIGQ---QQTGRIAFELFNDVVPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVV 149          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_ASPFU (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus fumigatus GN=cpr6 PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.567e-36
Identity = 82/146 (56.16%), Postives = 97/146 (66.44%), Query Frame = 3
Query:  297 KVYFDVSIGNP-VGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +VYFD+ IG+   G++A  +V   + D VP+TAENFRALCTGEKG G       YKGS FHRVIK FMIQ             SIYG  F DENF+L H  P ++SMAN+GP TNGSQFFI TV TP LD +HVVFG+V+ G  IV
Sbjct:    9 RVYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGSIFHRVIKQFMIQGGDFTNFNGTGGESIYGEKFPDENFELKHDRPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSIV 154          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.559e-36
Identity = 80/145 (55.17%), Postives = 96/145 (66.21%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG-------FGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +V+F+V+IG   GK  G+I   L+ D VP+TAENFRALCTGEKG         +KGS+FHRVIKDFM+Q             SIYG  F DE F   H  P ++SMANAGPNTNGSQFFI T +TP LD +HVVFG++L G  IV
Sbjct:    5 RVFFEVAIG---GKTIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIV 146          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIH_MOUSE (Peptidyl-prolyl cis-trans isomerase H OS=Mus musculus GN=Ppih PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 80/145 (55.17%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  282 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE-----KGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 701
            S V   V+FDVSIG   G+  GR+ I L+ D VP+TAENFR  CTGE        GYKGSTFHRVIKDFMIQ             SIY   F DENFKL H  PG++SMAN+GP+TNG QFFI   K  WLD +HVVFG++++G+
Sbjct:    7 SPVNPVVFFDVSIG---GQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGL 148          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIH_HUMAN (Peptidyl-prolyl cis-trans isomerase H OS=Homo sapiens GN=PPIH PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 80/145 (55.17%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  282 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE-----KGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 701
            S V   V+FDVSIG   G+  GR+ I L+ D VP+TAENFR  CTGE        GYKGSTFHRVIKDFMIQ             SIY   F DENFKL H  PG++SMAN+GP+TNG QFFI   K  WLD +HVVFG++++G+
Sbjct:    7 SPVNPVVFFDVSIG---GQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGL 148          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIH_BOVIN (Peptidyl-prolyl cis-trans isomerase H OS=Bos taurus GN=PPIH PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 80/145 (55.17%), Postives = 95/145 (65.52%), Query Frame = 3
Query:  282 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE-----KGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 701
            S V   V+FDVSIG   G+  GR+ I L+ D VP+TAENFR  CTGE        GYKGSTFHRVIKDFMIQ             SIY   F DENFKL H  PG++SMAN+GP+TNG QFFI   K  WLD +HVVFG++++G+
Sbjct:    7 SPVNPVVFFDVSIG---GQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFITCSKCDWLDGKHVVFGKIIDGL 148          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPH_ENCCU (Peptidyl-prolyl cis-trans isomerase OS=Encephalitozoon cuniculi GN=CPR1 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 76/145 (52.41%), Postives = 94/145 (64.83%), Query Frame = 3
Query:  276 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +  + +  VYFDV       +  GRIV+ L  D VP+TA+NFR LC   KG GYKGSTFHR+I  FM+Q             SIYG  F DENF+L H   G++SMAN G +TNGSQFFI   KT WLD++HVVFG+V+EGMD+V
Sbjct:    1 MAKEASGNVYFDVYANE---ESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGSTFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVV 142          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.776e-36
Identity = 79/143 (55.24%), Postives = 95/143 (66.43%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTG-EKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            ++T+KVYFD++ G+   K  GRIV+GLYG   PQT ENF  L    +   GY  S FHRVI +FMIQ             SI+G TFKDENF + H  PG +SMAN G NTNGSQFFI TV  PWLD +HVVFG+VL+GMD+V
Sbjct:   31 EITHKVYFDINHGD---KQIGRIVMGLYGLTTPQTVENFYQLTISRDPKMGYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVV 170          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 1.016e-35
Identity = 83/148 (56.08%), Postives = 96/148 (64.86%), Query Frame = 3
Query:  300 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXX---SIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            VYFD+S     GK  GR+V  LY D VP+TA NFR+LCTG+KG          YK S FHRVIKDFM Q                SIYG  F+DENFKL+H  P ++SMAN+GPNTNGSQFFI TV TP LD +HVVFG+V+EG  IV
Sbjct:    6 VYFDISCN---GKPKGRVVFKLYDDVVPKTAANFRSLCTGDKGISPKSGKPLSYKDSIFHRVIKDFMCQGGDFTAPSDHLGTGGESIYGEKFEDENFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIV 150          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: RBP2_MOUSE (E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.732e-35
Identity = 79/147 (53.74%), Postives = 93/147 (63.27%), Query Frame = 3
Query:  270 ADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            A+L       V+FDV      G+  GRI++ L+ + VPQTAENFRALCTGEKGFG+K S FHRV+ DF+ Q             SIYG  F DENF L H GPG++SMAN G NTN SQFFI   K   LD +HVVFG V +GMD V
Sbjct: 2885 AELSKDTNPVVFFDVCAD---GEPLGRIIMELFSNIVPQTAENFRALCTGEKGFGFKNSIFHRVVPDFICQGGDITKYNGTGGQSIYGDKFDDENFDLKHTGPGLLSMANYGQNTNSSQFFITLKKAEHLDFKHVVFGFVKDGMDTV 3028          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPID_EMENI1.567e-3655.17Peptidyl-prolyl cis-trans isomerase D OS=Emericell... [more]
PPID_ASPFU1.567e-3656.16Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPID_YARLI4.559e-3655.17Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPIH_MOUSE7.776e-3655.17Peptidyl-prolyl cis-trans isomerase H OS=Mus muscu... [more]
PPIH_HUMAN7.776e-3655.17Peptidyl-prolyl cis-trans isomerase H OS=Homo sapi... [more]
PPIH_BOVIN7.776e-3655.17Peptidyl-prolyl cis-trans isomerase H OS=Bos tauru... [more]
CYPH_ENCCU7.776e-3652.41Peptidyl-prolyl cis-trans isomerase OS=Encephalito... [more]
CYPD_YEAST7.776e-3655.24Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
PPID_CANAL1.016e-3556.08Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
RBP2_MOUSE1.732e-3553.74E3 SUMO-protein ligase RANBP2 OS=Mus musculus GN=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
back to top