CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIH_CRYNE (Peptidyl-prolyl cis-trans isomerase H OS=Cryptococcus neoformans GN=CYP3 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 73/139 (52.52%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  300 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGF-----GYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGM 701
            V+FD+SIG+     AGRI + L+ D  P+TAENFR LCTGE        GYK +TFHRVI  FM+Q             SIYG  F+DENFK+ H GPG++SMAN+GPNTNG QFFI T    +LD +H VFG+V++G+
Sbjct:   15 VFFDISIGDTP---AGRIKMELFDDITPKTAENFRQLCTGEHRINSVPQGYKKATFHRVIPQFMVQGGDFVRGDGTGSFSIYGAQFEDENFKVKHTGPGLLSMANSGPNTNGCQFFITTAPAEFLDGKHCVFGRVIDGL 150          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.621e-33
Identity = 76/149 (51.01%), Postives = 92/149 (61.74%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +  +V+FD+ +    G   GRIVI L+ D VP+TAENFRALCTGEKG G        YKGS FHR+IK FM Q             SIYG  F DE+F   H   G++SMAN GPNT  SQFFI T  TP LD +HVVFG+V+ G ++V
Sbjct:    2 INPRVFFDIDVD---GNRIGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDESFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVV 147          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 77/144 (53.47%), Postives = 94/144 (65.28%), Query Frame = 3
Query:  282 SKVTNKV-YFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            SK TN V +FD+   +   +  GRI + L+ + VP+TAENFRALCTGEKGFG+K S FHRVI DF+ Q             SIYG  F+DENF + H GPG++SMAN G +TN SQFFI   K   LD +HVVFG V +GMD V
Sbjct:  920 SKETNPVVFFDICADD---EPLGRITMELFSNIVPKTAENFRALCTGEKGFGFKSSIFHRVIPDFVCQGGDITKHDGTGGRSIYGDKFEDENFDVKHTGPGLLSMANRGQDTNNSQFFITLKKAERLDFKHVVFGFVKDGMDTV 1060          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_YEAST (Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccharomyces cerevisiae GN=CPR6 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.118e-33
Identity = 79/147 (53.74%), Postives = 90/147 (61.22%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG---------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K +FD+SIG   GK  GRIV  LY D VP+TAENF  LC G  G           YKGS FHRVIKDFM Q             SIY   F+DENF + H  P ++SMANAGPNTNGSQ FI  V TP LD +HVVFG+V++G  IV
Sbjct:    5 KTFFDISIG---GKPQGRIVFELYNDIVPKTAENFLKLCEGNAGMAKTKPDVPLSYKGSIFHRVIKDFMCQFGDFTNFNGTGGESIYDEKFEDENFTVKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIQGKRIV 148          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.051e-32
Identity = 78/153 (50.98%), Postives = 91/153 (59.48%), Query Frame = 3
Query:  276 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +  K   +V+ DV+I    G LAGRIV+ LY D  P+T  NF  LCTG  G G        YKGSTFHRVIK+FMIQ             SIYG  F DE F + H  P VVSMAN GPNTNGSQFFI T   P L+  HVVFG+V+ G ++V
Sbjct:    1 MSKKDRRRVFLDVTID---GNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVV 150          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.058e-32
Identity = 73/144 (50.69%), Postives = 92/144 (63.89%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG------FGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            + +FD+SI    G+ AGRIV  L+    P+T ENFRA CTGE G        Y+GS FHRVIK FMIQ             SIYGRTF DEN  L H  P ++SMAN GP+TNGSQFFI + + P LD +H VFG+V++G+++V
Sbjct:   10 RAFFDISIN---GEPAGRIVFSLWNHCCPRTVENFRAFCTGELGKMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDENLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVV 150          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_SCHMA (Peptidyl-prolyl cis-trans isomerase OS=Schistosoma mansoni PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.812e-32
Identity = 72/138 (52.17%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K +FD+  G+   +  GRI+  L+ +DVP T  NFR LCT +  FGYKGS FHR+I  FM Q             SIYG  FKDENF   H     +SMANAGPNTNGSQFFI TV   WLD +HVVFG+V+ G+D+V
Sbjct:    4 KAFFDIKAGD---ERLGRIIFELF-NDVPDTTRNFRELCTHKNNFGYKGSVFHRIIPGFMCQGGDFTNGDGTGGKSIYGNKFKDENFNHKHEAFS-LSMANAGPNTNGSQFFITTVPCSWLDGKHVVFGKVVSGIDVV 136          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.897e-32
Identity = 75/147 (51.02%), Postives = 89/147 (60.54%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG---------FGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K YFD+SIG   GK AGR+V  +Y D  P+TAENF  LC G+ G           Y+GS FHRVIK FM Q             SIYG  F+DENF   H  P ++SMANAGPNTNGSQ FI    TP LD +HVVFG+V++G  +V
Sbjct:    6 KTYFDLSIG---GKPAGRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDENFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVV 149          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIH_SCHPO (Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizosaccharomyces pombe GN=cyp3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.518e-31
Identity = 75/144 (52.08%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  300 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE------KGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYG-RTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V+ D++I    G+L GRI I L+   VP+TAENFR  CTGE      K  GYK STFHR+I+ FMIQ             +I+  RTF DENF L H  PG++SMANAG ++NG QFFI TV   +LD +HVVFG+V+EG DIV
Sbjct:    7 VFMDIAID---GRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRIIQGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITTVPCDFLDGKHVVFGEVIEGYDIV 147          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.381e-31
Identity = 75/143 (52.45%), Postives = 91/143 (63.64%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGF-GYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTV-KTPWLDQRHVVFGQVLEGMDIV 710
            +T KV+FD+  G    +  GRIVIGLYG   P+TA+NF  L T      G+ GSTFHRVI +FM+Q             SIYG TF DENF L H   G +SMAN G +TNGSQFFI T  +  WLD +HVVFGQV++GMD+V
Sbjct:   34 ITQKVFFDIEHGE---EKVGRIVIGLYGKVCPKTAKNFYKLSTTTNSKKGFIGSTFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVV 173          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIH_CRYNE1.621e-3352.52Peptidyl-prolyl cis-trans isomerase H OS=Cryptococ... [more]
CYP11_RHIOR1.621e-3351.01Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
RBP2_BOVIN2.118e-3353.47E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
PPID_YEAST2.118e-3353.74Peptidyl-prolyl cis-trans isomerase CPR6 OS=Saccha... [more]
CYP1_BRUMA1.051e-3250.98Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
CYP8_CAEEL3.058e-3250.69Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
PPIA_SCHMA6.812e-3252.17Peptidyl-prolyl cis-trans isomerase OS=Schistosoma... [more]
PPID_ASHGO8.897e-3251.02Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIH_SCHPO1.518e-3152.08Peptidyl-prolyl cis-trans isomerase cyp3 OS=Schizo... [more]
CYPB_YEAST3.381e-3152.45Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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