CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIG_RAT (Peptidyl-prolyl cis-trans isomerase G OS=Rattus norvegicus GN=Ppig PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 71/146 (48.63%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            + +FD++I N   + AGR+V  L+ D  P+T ENFR LCTGEKG G        YK   FHRV+KDFM+Q             SIYG  F+DE+F + H    ++SMAN G +TNGSQFFI T  TP LD  HVVFGQV+ G ++V
Sbjct:    9 RCFFDIAINN---QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVV 151          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIG_MOUSE (Peptidyl-prolyl cis-trans isomerase G OS=Mus musculus GN=Ppig PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 71/146 (48.63%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            + +FD++I N   + AGR+V  L+ D  P+T ENFR LCTGEKG G        YK   FHRV+KDFM+Q             SIYG  F+DE+F + H    ++SMAN G +TNGSQFFI T  TP LD  HVVFGQV+ G ++V
Sbjct:    9 RCFFDIAINN---QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVV 151          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIG_HUMAN (Peptidyl-prolyl cis-trans isomerase G OS=Homo sapiens GN=PPIG PE=1 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.416e-31
Identity = 71/146 (48.63%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            + +FD++I N   + AGR+V  L+ D  P+T ENFR LCTGEKG G        YK   FHRV+KDFM+Q             SIYG  F+DE+F + H    ++SMAN G +TNGSQFFI T  TP LD  HVVFGQV+ G ++V
Sbjct:    9 RCFFDIAINN---QPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITTKPTPHLDGHHVVFGQVISGQEVV 151          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_NEOCA (Peptidyl-prolyl cis-trans isomerase OS=Neospora caninum PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 5.767e-31
Identity = 79/148 (53.38%), Postives = 93/148 (62.84%), Query Frame = 3
Query:  246 LVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 689
            ++  SA VA+  +    K + D+ I    G+ AGRIV+ L GD VP+T +NF  L        YKGSTFHRVI DFMIQ             SIYG  F+DENF L H   GV+SMANAGPNTNGSQFFI TVKT WLD RHVVFG++
Sbjct:    9 VLAVSAAVAE--NAGVQKAFMDIEID---GESAGRIVLELRGDVVPKTVKNFIGLFDK-----YKGSTFHRVIADFMIQGGDFENHNGTGGHSIYGPRFEDENFTLKH-DRGVISMANAGPNTNGSQFFITTVKTEWLDGRHVVFGKI 145          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_CRYNE (Peptidyl-prolyl cis-trans isomerase D OS=Cryptococcus neoformans GN=CPR6 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 9.837e-31
Identity = 71/142 (50.00%), Postives = 89/142 (62.68%), Query Frame = 3
Query:  303 YFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKG------FGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            YFD++I N   + AGR+   L+ D VP+TA NF+ LC G+K         Y GS+FHR IK FM+Q             SIYG  F+DENF+L H  P ++SMANAGP TNGSQFFI TV TP LD +HVVFG+V+    +V
Sbjct:    7 YFDITIAN---EPAGRLTFELFDDVVPKTANNFKHLCIGDKTNEAGVKLAYAGSSFHRCIKGFMLQGGDFTRGDGTGGESIYGEKFEDENFELKHDKPMLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGRVIYNRSLV 145          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_SCHPO (40 kDa peptidyl-prolyl cis-trans isomerase OS=Schizosaccharomyces pombe GN=wis2 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.285e-30
Identity = 72/140 (51.43%), Postives = 90/140 (64.29%), Query Frame = 3
Query:  303 YFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG----YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            YF +SI    GK+   I   L+ + VP+T +NF +LC G +  G    YKGS FHRVIK+FM+Q             SIYG  F+DENF+L H  P ++SMANAGPNTNGSQFFI TV TP LD +HVVFG+V++G   V
Sbjct:    6 YFKISID---GKIQPTIYFELFDNVVPKTVKNFASLCNGFEKDGRCLTYKGSRFHRVIKNFMLQGGDFTRGNGTGGESIYGEKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGKVIQGKSTV 142          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.882e-30
Identity = 69/146 (47.26%), Postives = 89/146 (60.96%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +V+ D+S+      L GRI I L+ +D P+T ENFRALCTGE G          YK + FHR++K FMIQ             SIYGR F DE FKL H  P ++SMAN GPN+N SQFFI T   P  + +HVVFG+V++G ++V
Sbjct:    6 RVFLDISVDE---NLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVV 148          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.423e-29
Identity = 69/149 (46.31%), Postives = 87/149 (58.39%), Query Frame = 3
Query:  267 VADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCT-GEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V+ L   VT+K+Y DV       K  GRIV GL+G   P+T  NFR +C  G  G  Y GS FHRVI  F+IQ             SIYG  F+DE   + H+ PG + MAN GP+TNG QF++ TV   WL+ +H VFG+V+EGMD V
Sbjct:   17 VSGLSFTVTSKIYMDVKHQK---KPLGRIVFGLFGKRAPKTVTNFRHICLRGINGTTYVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTV 162          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.050e-29
Identity = 68/151 (45.03%), Postives = 89/151 (58.94%), Query Frame = 3
Query:  282 SKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            S +  +V+ D+++     K  GRI I L+  + P+T ENFRALCTGE G          YKG+  HRV+K FMIQ             SIYGR F DE F L H  P ++SMAN GPN+N SQFFI T   P  + +HVVFG+V++G ++V
Sbjct:    2 SSLEKRVFLDMALDE---KPIGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDEKFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVV 149          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 69/144 (47.92%), Postives = 86/144 (59.72%), Query Frame = 3
Query:  303 YFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +FD+ I     +  GRI+  L+ D  P+T +NF  LC+GEKG G        YKGSTFHRV+K+FMIQ             SIYG  FKDENF L H    ++SMAN G +TNGSQFFI T   P LD  HVVFG V+ G +++
Sbjct:   10 HFDIEINR---EPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVI 150          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIG_RAT4.416e-3148.63Peptidyl-prolyl cis-trans isomerase G OS=Rattus no... [more]
PPIG_MOUSE4.416e-3148.63Peptidyl-prolyl cis-trans isomerase G OS=Mus muscu... [more]
PPIG_HUMAN4.416e-3148.63Peptidyl-prolyl cis-trans isomerase G OS=Homo sapi... [more]
PPIA_NEOCA5.767e-3153.38Peptidyl-prolyl cis-trans isomerase OS=Neospora ca... [more]
PPID_CRYNE9.837e-3150.00Peptidyl-prolyl cis-trans isomerase D OS=Cryptococ... [more]
PPID_SCHPO1.285e-3051.4340 kDa peptidyl-prolyl cis-trans isomerase OS=Schi... [more]
CYP9_CAEEL4.882e-3047.26Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
CYPR_CALVI2.423e-2946.31Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYP9_CAEBR7.050e-2945.03Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
NKTR_MOUSE1.202e-2847.92NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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