CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 90/137 (65.69%), Postives = 99/137 (72.26%), Query Frame = 3
Query:  300 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            VY DV      G+  GR+V+ L  D VP+TAENFRALCTGEKGFGYKGSTFHRVI  FM Q             SIYG  F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WLD +HVVFG V EGMD+V
Sbjct:   47 VYLDVGAD---GQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVV 180          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 91/142 (64.08%), Postives = 105/142 (73.94%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT+ VYFD+  G+   +  GR+ IGL+G  VP+TAENFRAL TGEKGFGY+GS FHRVI +FMIQ             SIYG  F DENFKLSH  PG++SMANAGP++NGSQFFI TVKTPWLD  HVVFG+VL G DIV
Sbjct:   24 KVTDTVYFDLQQGD---EFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIV 162          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_RAT (Peptidyl-prolyl cis-trans isomerase B OS=Rattus norvegicus GN=Ppib PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 92/142 (64.79%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT KVYFD  IG+   +  GR+  GL+G  VP+T +NF AL TGEKGFGYK S FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+VLEGMD+V
Sbjct:   41 KVTVKVYFDFQIGD---EPVGRVTFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVV 179          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.373e-45
Identity = 89/141 (63.12%), Postives = 105/141 (74.47%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +T+K+YFD+  G+   +  GRIV+GLYG  VP+TAENF+ L TGE G+GYKGSTFHRVIK FMIQ             SIYG  F DENFKL H  PG++SMANAG +TNGSQFFI TV TPWLD +HVVFG+VLEGMD+V
Sbjct:   32 ITDKIYFDIKQGD---ESLGRIVLGLYGKTVPKTAENFKQLATGENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADENFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVV 169          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.017e-45
Identity = 100/176 (56.82%), Postives = 117/176 (66.48%), Query Frame = 3
Query:  189 LTPVPPLTHFPTRKMGTRSLVRASAE--VADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            ++P P L       +G  +LV +S    V      VT+KV+FDV IG+   K  GRIVIGL+G+ VP+T ENF AL TGEKG+GYKGS FHRVIKDFMIQ             SIYG TF DENFKL H G G VSMANAGP+TNGSQFFI   K  WLD +HVVFG+VL+GM +V
Sbjct:    1 MSPGPRLLLPAVLCLGLGALVSSSGSSGVRKRGPSVTDKVFFDVRIGD---KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVV 173          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_HUMAN (Peptidyl-prolyl cis-trans isomerase B OS=Homo sapiens GN=PPIB PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.017e-45
Identity = 91/142 (64.08%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT KVYFD+ IG+   +  GR++ GL+G  VP+T +NF AL TGEKGFGYK S FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+VLEGM++V
Sbjct:   41 KVTVKVYFDLRIGD---EDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKVLEGMEVV 179          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP7_CAEEL (Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhabditis elegans GN=cyn-7 PE=1 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 2.666e-44
Identity = 90/145 (62.07%), Postives = 105/145 (72.41%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +V+FD++I    GK  GRIV+ LY D VP+TAENFRALCTGEKG G       +KGS FHR+I +FMIQ             SIYG  F DENFK  H GPGV+SMANAGPNTNGSQFF+CTVKT WLD +HVVFG+V+EG+DIV
Sbjct:    5 RVFFDITIA---GKPTGRIVMELYNDIVPKTAENFRALCTGEKGVGKSGKPLHFKGSKFHRIIPEFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTAWLDGKHVVFGRVVEGLDIV 146          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 92/160 (57.50%), Postives = 111/160 (69.38%), Query Frame = 3
Query:  231 MGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +G   L  A    A    K+T+KVYFD++ G+   +  GR+V+GLYG  VP+T ENFRAL TGEKGFGY+GS FHRVIK+FMIQ             SIYG  FKDENFKL H   G++SMANAG +TNGSQFFI TV T WLD +HVVFG+VLEG +I+
Sbjct:   14 LGLGLLFLAQTAEAAKGPKITHKVYFDITQGD---QPLGRVVMGLYGKTVPETTENFRALATGEKGFGYEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDENFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEII 170          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPH_BRANA (Peptidyl-prolyl cis-trans isomerase OS=Brassica napus GN=CYP PE=2 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 91/148 (61.49%), Postives = 103/148 (69.59%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V  KVYFD+++G+   K AGRIV+ LY D VP+TAENFRALCTGE+G G       YKGS FHRVI  FM Q             SIYG  FKDENF   H GPG++SM NAG NTNGSQFFICT KT WLD +HVVFGQV+EGMD+V
Sbjct:    2 VNPKVYFDMTVGD---KAAGRIVMELYADTVPETAENFRALCTGERGIGKSGKPLHYKGSAFHRVIPKFMCQGGDFTAGNGTGGESIYGMKFKDENFVKKHTGPGILSMRNAGSNTNGSQFFICTEKTSWLDGKHVVFGQVVEGMDVV 146          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP3_CAEEL (Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhabditis elegans GN=cyn-3 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.482e-44
Identity = 89/146 (60.96%), Postives = 106/146 (72.60%), Query Frame = 3
Query:  294 NKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +KV+FD++IG   GK +GRIV+ LY D VP+TA NFRALCTGE G G       +KGS FHR+I +FMIQ             SIYG  F DENFK  H GPGV+SMANAGPNTNGSQFF+CTVKT WLD +HVVFG+V+EG+D+V
Sbjct:    4 SKVFFDITIG---GKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCTVKTEWLDGKHVVFGRVVEGLDVV 146          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIF_MOUSE5.373e-4565.69Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_SCHPO5.373e-4564.08Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_RAT5.373e-4564.79Peptidyl-prolyl cis-trans isomerase B OS=Rattus no... [more]
PPIB1_RHIOR5.373e-4563.12Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
PPIC_MOUSE7.017e-4556.82Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIB_HUMAN7.017e-4564.08Peptidyl-prolyl cis-trans isomerase B OS=Homo sapi... [more]
CYP7_CAEEL2.666e-4462.07Peptidyl-prolyl cis-trans isomerase 7 OS=Caenorhab... [more]
PPIB_GIBZE3.482e-4457.50Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]
CYPH_BRANA3.482e-4461.49Peptidyl-prolyl cis-trans isomerase OS=Brassica na... [more]
CYP3_CAEEL3.482e-4460.96Peptidyl-prolyl cis-trans isomerase 3 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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