CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9798 contig Csv1_Contig9798:60..769. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB2_RHIOR (Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus oryzae GN=cyp9 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.948e-43
Identity = 86/141 (60.99%), Postives = 102/141 (72.34%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +T+K+YFD+  G    +  GRIV GLYG  VP+TAENF+ L TG+ G+GYKGSTFHRVI  FMIQ             SIYG  F DENFKL H  PG++SMANAGP++NGSQFFI TV T WLD +HVVFG+VLEGMD+V
Sbjct:   32 ITDKIYFDIKQGE---ESLGRIVFGLYGKTVPKTAENFKQLATGQNGYGYKGSTFHRVIDQFMIQGGDFTNHDGTGGKSIYGSRFPDENFKLRHTVPGLLSMANAGPDSNGSQFFITTVVTSWLDGKHVVFGKVLEGMDVV 169          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPH_MAIZE (Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN=CYP PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 89/145 (61.38%), Postives = 103/145 (71.03%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +V+FD+++G   G  AGRIV+ LY ++VP+TAENFRALCTGEKG G       YKGSTFHRVI +FM Q             SIYG  F DE F      PGV+SMANAGPNTNGSQFFICTV TPWLD +HVVFGQV+EGMD+V
Sbjct:    5 RVFFDMTVG---GAPAGRIVMELYANEVPKTAENFRALCTGEKGVGKSGKPLHYKGSTFHRVIPEFMCQGGDFTRGNGTGGESIYGEKFPDEKFVRKQPAPGVLSMANAGPNTNGSQFFICTVATPWLDGKHVVFGQVVEGMDVV 146          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP5_CAEEL (Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhabditis elegans GN=cyn-5 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 91/142 (64.08%), Postives = 100/142 (70.42%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT+KVYFD+ IG   GK  GRIVIGL+G  VP+TA NF  L    KG GY GS FHRVI DFMIQ             SIYG  F DENFKL H G G +SMANAG +TNGSQFFI TVKTPWLD RHVVFG++LEGMD+V
Sbjct:   26 KVTDKVYFDMEIG---GKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADFMIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTPWLDGRHVVFGKILEGMDVV 164          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CP19B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Arabidopsis thaliana GN=CYP19-2 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 88/145 (60.69%), Postives = 105/145 (72.41%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KV+FD++IG   G  AG+IV+ LY D  P+TAENFRALCTGEKG G       +KGS+FHRVI +FM Q             SIYG  F+DENF+  H GPG++SMANAG NTNGSQFFICTVKT WLD +HVVFGQV+EG+D+V
Sbjct:    6 KVFFDMTIG---GAPAGKIVMELYTDKTPKTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTKGNGTGGESIYGAKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVV 147          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CP18C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Arabidopsis thaliana GN=CYP18-3 PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 89/145 (61.38%), Postives = 104/145 (71.72%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVYFD++I    G+ AGRIV+ LY D  P+TAENFRALCTGEKG G       +KGS FHRVI +FM Q             SIYG  F+DENF+  H GPG++SMANAG NTNGSQFFICTVKT WLD +HVVFGQV+EG+D+V
Sbjct:    5 KVYFDMTID---GQPAGRIVMELYTDKTPRTAENFRALCTGEKGVGGTGKPLHFKGSKFHRVIPNFMCQGGDFTAGNGTGGESIYGSKFEDENFERKHTGPGILSMANAGANTNGSQFFICTVKTDWLDGKHVVFGQVVEGLDVV 146          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_SAGOE (Peptidyl-prolyl cis-trans isomerase A OS=Saguinus oedipus GN=PPIA PE=3 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 86/141 (60.99%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V   V+FD+++    G+  GR+   L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I  FM Q             SIYG  F DENF L H GPG++SMANAGPNTNGSQFFICTVKT WLD +HVVFG+V EGM+IV
Sbjct:    2 VNPTVFFDIAVD---GEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIV 139          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_AOTTR (Peptidyl-prolyl cis-trans isomerase A OS=Aotus trivirgatus GN=PPIA PE=2 SV=3)

HSP 1 Score: 174.096 bits (440), Expect = 6.568e-43
Identity = 86/141 (60.99%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V   V+FD+++    G+  GR+   L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I  FM Q             SIYG  F DENF L H GPG++SMANAGPNTNGSQFFICTVKT WLD +HVVFG+V EGM+IV
Sbjct:    2 VNPTVFFDIAVD---GEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTVKTEWLDGKHVVFGKVKEGMNIV 139          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.578e-43
Identity = 86/141 (60.99%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V   V+FD+S     G+  GR+   L+ D VP+TAENFRAL TGEKGFGYKGS+FHR+I  FM Q             SIYG  F+DENF L H GPG++SMANAGPNTNGSQFFICT KT WLD +HVVFG+V EGM+IV
Sbjct:    2 VNPTVFFDISAD---GEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_RABIT (Peptidyl-prolyl cis-trans isomerase A OS=Oryctolagus cuniculus GN=PPIA PE=2 SV=3)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 85/141 (60.28%), Postives = 99/141 (70.21%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V   V+FD+++    G+  GR+   L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I  FM Q             SIYG  F+DENF L H GPG++SMANAGPNTNGSQFFICT KT WLD +HVVFG+V EGM IV
Sbjct:    2 VNPTVFFDIAVD---GEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFLLKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGRVKEGMSIV 139          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_PONPY (Peptidyl-prolyl cis-trans isomerase A OS=Pongo pygmaeus GN=PPIA PE=2 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 1.120e-42
Identity = 85/141 (60.28%), Postives = 100/141 (70.92%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V   V+FD+++    G+  GR+   L+ D VP+TAENFRAL TGEKGFGYKGS FHR+I  FM Q             SIYG  F+DENF L H GPG++SMANAGPNTNGSQFFICT KT WLD +HVVFG+V EGM+IV
Sbjct:    2 VNPTVFFDIAVD---GEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIV 139          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIB2_RHIOR2.948e-4360.99Peptidyl-prolyl cis-trans isomerase B2 OS=Rhizopus... [more]
CYPH_MAIZE5.029e-4361.38Peptidyl-prolyl cis-trans isomerase OS=Zea mays GN... [more]
CYP5_CAEEL5.029e-4364.08Peptidyl-prolyl cis-trans isomerase 5 OS=Caenorhab... [more]
CP19B_ARATH5.029e-4360.69Peptidyl-prolyl cis-trans isomerase CYP19-2 OS=Ara... [more]
CP18C_ARATH5.029e-4361.38Peptidyl-prolyl cis-trans isomerase CYP18-3 OS=Ara... [more]
PPIA_SAGOE6.568e-4360.99Peptidyl-prolyl cis-trans isomerase A OS=Saguinus ... [more]
PPIA_AOTTR6.568e-4360.99Peptidyl-prolyl cis-trans isomerase A OS=Aotus tri... [more]
PPIA_CRIGR8.578e-4360.99Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPIA_RABIT1.120e-4260.28Peptidyl-prolyl cis-trans isomerase A OS=Oryctolag... [more]
PPIA_PONPY1.120e-4260.28Peptidyl-prolyl cis-trans isomerase A OS=Pongo pyg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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