CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIE_HUMAN (Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.204e-40
Identity = 81/138 (58.70%), Postives = 97/138 (70.29%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +VY D+ IGN   K AGRI + L  D VP TAENFR LCT EKGFG+KGS+FHR+I  FM Q             SIYG+ F DENF L H GPG++SMAN+GPNTNGSQFF+   KT WLD +HVVFG+V EG+D++
Sbjct:  141 QVYMDIKIGN---KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVL 275          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.204e-40
Identity = 82/142 (57.75%), Postives = 102/142 (71.83%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +VT+KV+FD+ IG   G+  G+IVIGL+G+ VP+T +NF  L    +G GY GS FHRVI++FMIQ             SIYG  F+DENFKL H GPG +SMANAG +TNGSQFFI T KT WLD +HVVFG++LEGMD+V
Sbjct:   23 RVTDKVFFDMEIG---GRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEGYVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVV 161          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIE_SCHJA (Peptidyl-prolyl cis-trans isomerase E (Fragment) OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 82/144 (56.94%), Postives = 99/144 (68.75%), Query Frame = 3
Query:  279 QSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            Q +   +V+FD+ IGN      GRIV+ L  D VP+TAENFRALCTG++GFGY    FHRVI  FM Q             SIYGR F DENF+L H G GV+SMAN+GPNTNGSQFFICT K  WLD +HVVFG+V++G ++V
Sbjct:   13 QKRNLPRVFFDIRIGNAD---RGRIVMELRSDIVPRTAENFRALCTGDRGFGYHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVV 153          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIE_BOVIN (Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.876e-40
Identity = 81/149 (54.36%), Postives = 102/149 (68.46%), Query Frame = 3
Query:  264 EVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            E A  +++   +VY D+ IGN   K AGRI + L  D VP TAENFR LCT EKGFG+KGS+FHR+I  FM Q             SIYG+ F DENF L H GPG++SMAN+GPNTNGSQFF+   KT WLD +HVVFG++ +G+D++
Sbjct:  130 EPAVKKARSNPQVYMDIKIGN---KPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDWLDGKHVVFGEITDGLDVL 275          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_SCHMA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma mansoni GN=CYP PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.977e-39
Identity = 85/147 (57.82%), Postives = 101/147 (68.71%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE-----KGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT+KV+FD+ +    GK   RI+IGL+G  VP+T ENF+ L  G      +   YKGSTFHRVIK FMIQ             SIYG  F DENFKL H+G G +SMANAGP+TNGSQFFI TVKT WLD +HVVFG+V+EGM+IV
Sbjct:   29 KVTDKVFFDIEVD---GKPLARIIIGLFGKTVPKTVENFKQLSIGTQLKDGRTASYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGDRFPDENFKLRHVGAGWLSMANAGPDTNGSQFFITTVKTSWLDGKHVVFGKVVEGMNIV 172          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_STRCH (Peptidyl-prolyl cis-trans isomerase A OS=Streptomyces chrysomallus GN=ppiA PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.583e-39
Identity = 82/136 (60.29%), Postives = 96/136 (70.59%), Query Frame = 3
Query:  288 VTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLE 695
            +T KVYFD++I +     AGRI   L+ D VP+TAENFRAL TGEKGFGY GS+FHRVI DFM+Q             SIYG  F DENF+L H   G++SMANAG NTNGSQFFI TV TPWLD +HVVFG+V +
Sbjct:    1 MTTKVYFDITIDDAP---AGRITFNLFDDVVPKTAENFRALATGEKGFGYAGSSFHRVITDFMLQGGDFTRGDGTGGKSIYGEKFADENFQLKHDRVGLLSMANAGKNTNGSQFFITTVLTPWLDGKHVVFGEVAD 133          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_ECHGR (Peptidyl-prolyl cis-trans isomerase OS=Echinococcus granulosus GN=CYP-1 PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.583e-39
Identity = 84/138 (60.87%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            K +FD+SIG   GK AGRIV  L+ DDVP+T ENFRALCTGEKGFGYKGS FHR+I  FM Q             SIYG  F+DENF   H  P ++SMANAG NTNGSQFFI T  T WLD +HVVFG+V  G D+V
Sbjct:    4 KCFFDISIG---GKPAGRIVFALF-DDVPKTVENFRALCTGEKGFGYKGSKFHRIIPGFMCQGGDFTAGNGTGGKSIYGSKFEDENFNHKHSKPMMLSMANAGKNTNGSQFFITTAVTSWLDGKHVVFGEVESGEDVV 137          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.405e-39
Identity = 87/154 (56.49%), Postives = 100/154 (64.94%), Query Frame = 3
Query:  270 ADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            A+  S    +VYFD+SIG   GK  GRI + LY D VP+TA+NFR+LCTGEKG G       YKGS FHRVIK FMIQ             SIYG  F DE F + H  P ++SMANAGPNTNGSQFFI TV TP LD +HVVFG+VL G  +V
Sbjct:    3 AEGDSPARPRVYFDISIG---GKSVGRITMELYADLVPKTADNFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVV 153          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPI2_SYNY3 (Peptidyl-prolyl cis-trans isomerase slr1251 OS=Synechocystis sp. (strain PCC 6803) GN=slr1251 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.405e-39
Identity = 82/146 (56.16%), Postives = 102/146 (69.86%), Query Frame = 3
Query:  294 NKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +KV+FD++IG+     AGRIV+ L+ +  P+TAENFRALCTGEKG G       +KGS FHRVI DFM Q             SIYG  F DENF+L H  PG++SMANAGPNTNGSQFF+  V  PWLD +HVVFG+V+EG++I+
Sbjct:    3 SKVFFDITIGSDT---AGRIVMELFDEVTPKTAENFRALCTGEKGVGKAGKPLHFKGSHFHRVITDFMAQGGDFTRGNGTGGESIYGEKFADENFQLKHDRPGLLSMANAGPNTNGSQFFLTFVPCPWLDGKHVVFGEVVEGLEIL 145          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.405e-39
Identity = 83/146 (56.85%), Postives = 99/146 (67.81%), Query Frame = 3
Query:  297 KVYFDVSI-GNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +V+FD+S+ G P+G    RI + L+ D  P TAENFRALCTGEKG G       +KGS FHRVI  FM Q             SIYG  FKDENF   H G G++SMAN+GPNTNGSQFFICT KT WLD +HVVFGQV++G+D+V
Sbjct:    5 RVFFDMSLSGTPIG----RIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDENFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVV 146          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIE_HUMAN5.204e-4058.70Peptidyl-prolyl cis-trans isomerase E OS=Homo sapi... [more]
CYP6_CAEEL5.204e-4057.75Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]
PPIE_SCHJA8.876e-4056.94Peptidyl-prolyl cis-trans isomerase E (Fragment) O... [more]
PPIE_BOVIN8.876e-4054.36Peptidyl-prolyl cis-trans isomerase E OS=Bos tauru... [more]
PPIB_SCHMA1.977e-3957.82Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIA_STRCH2.583e-3960.29Peptidyl-prolyl cis-trans isomerase A OS=Streptomy... [more]
PPIA_ECHGR2.583e-3960.87Peptidyl-prolyl cis-trans isomerase OS=Echinococcu... [more]
PPID_GIBZE4.405e-3956.49Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPI2_SYNY34.405e-3956.16Peptidyl-prolyl cis-trans isomerase slr1251 OS=Syn... [more]
CP18D_ARATH4.405e-3956.85Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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