CN188527

Overview
NameCN188527
Unique NameCN188527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.814e-39
Identity = 81/148 (54.73%), Postives = 98/148 (66.22%), Query Frame = 3
Query:  267 VADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            V +   K   +V+FD+ IG   G  AGRIV+ L  D VP+TAENFR LCT E+G+GYKG +FHRVI +FM Q             SIYG+ F DENF L H   G +SMAN+G NTNGSQFFICT KT WLD +HVVFG V+ G ++V
Sbjct:  130 VIEKAEKRNPQVFFDIRIG---GNDAGRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVV 274          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYPH_ALLCE (Peptidyl-prolyl cis-trans isomerase OS=Allium cepa GN=CYP PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.814e-39
Identity = 81/122 (66.39%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  363 LYGDDVPQTAENFRALCTGEKGFG------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            L+ D VPQTAENFRALCTGEKG G      YKGS+FHRVI  FM Q             SIYG  FKDENF   H GPGV+SMANAGP TNGSQFFICT KT WLD +HVVFGQV+EGMD+V
Sbjct:    3 LFQDVVPQTAENFRALCTGEKGMGDRKPLHYKGSSFHRVIPGFMCQGGDFTAGNGTGGESIYGAKFKDENFIKKHTGPGVLSMANAGPGTNGSQFFICTEKTAWLDGKHVVFGQVVEGMDVV 124          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.282e-38
Identity = 81/147 (55.10%), Postives = 98/147 (66.67%), Query Frame = 3
Query:  285 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGE-----KGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            KVT KV+FD+ +     +  GRI+IGL+G  VP+T ENF+ L  G      +   YKGSTFHRVIK FMIQ             SIYG  F DENFKL H+G G +SMANAGPNTNG+QFFI T + PWLD +HVVFG+V+EGM +V
Sbjct:   29 KVTEKVFFDIEVDE---QPLGRIIIGLFGKTVPKTVENFKQLSIGTTLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVV 172          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.282e-38
Identity = 83/152 (54.61%), Postives = 98/152 (64.47%), Query Frame = 3
Query:  276 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            + +K   KV+FDV++    GK +GR+   L+ D VP+TAENFRALCTGEKG G       YKGS FHR+I  FM Q             SIYG  F DENF L H G GV+SMANAGPNTNGSQFFI   KTPWLD  H VFGQ++EG  ++
Sbjct:    1 MAAKNLPKVFFDVAVN---GKPSGRLTFKLFSDTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDENFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVL 149          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.186e-38
Identity = 81/152 (53.29%), Postives = 100/152 (65.79%), Query Frame = 3
Query:  276 LQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            + +K   KV+FD+++    G+ +GR+   L+ D VP+TAENFRALCTGEKG G       YK S FHR+I  FM Q             SIYGRTFKDENF L H G G++SMANAGPNTNGSQFFI  V TPWLD  H VFGQ+++G  ++
Sbjct:    1 MAAKNLPKVFFDIAVN---GQHSGRMTFKLFSDTVPKTAENFRALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDENFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVL 149          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.729e-38
Identity = 85/145 (58.62%), Postives = 100/145 (68.97%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +VYFD++IGN   K  GRIV  L+ D VP+TAENFRALCTGEKG G       Y+GS FHR+IK+FMIQ             SIYG  F+DENF L H  P ++SMANAGP TNGSQFFI TV TP LD +HVVFG+VL+G  +V
Sbjct:    5 RVYFDITIGN---KPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVV 146          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPIA_PARPR (Peptidyl-prolyl cis-trans isomerase OS=Paramecium primaurelia PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 79/135 (58.52%), Postives = 89/135 (65.93%), Query Frame = 3
Query:  300 VYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMD 704
            V+FDV  G    K   +IV  LY D VP+TA NFR L TG +GFGYKGS FHRVI DFM Q             SIYG  F DENFKL H  P ++SMANAGPNTNGSQFFI  V  PWLD +HVVFG+V++G D
Sbjct:    4 VFFDVQFGGDAPK---KIVFKLYDDVVPKTAANFRELATGSRGFGYKGSVFHRVITDFMAQGGDFTNFNGTGGKSIYGEKFADENFKLKHTKPALLSMANAGPNTNGSQFFITFVPCPWLDGKHVVFGEVVDGFD 135          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: CYP40_ARATH (Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.308e-38
Identity = 84/147 (57.14%), Postives = 99/147 (67.35%), Query Frame = 3
Query:  294 NKVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIV 710
            +K + D+SIG   G+L GRIVI LY D VP+TAENFR LCTGEKG G        YKG+ FHRVIK FMIQ             SIYG  F DENF+L H   G++SMAN+GPNTNGSQFFI T +T  LD +HVVFG+V +GM +V
Sbjct:    4 SKCFMDISIG---GELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFELKHERKGMLSMANSGPNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVV 147          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 82/145 (56.55%), Postives = 98/145 (67.59%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDI 707
            +V+FDV IG   G+  GRIV+ L+ D VP+TAENFRALCTGEKG G        +KG  FHR+IK FMIQ             SIYG  F+DENF   H   G++SMANAGPNTNGSQFFI TV TP LD +HVVFGQV++G+ +
Sbjct:   17 RVFFDVDIG---GERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGV 158          
BLAST of CN188527 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 1.085e-37
Identity = 82/145 (56.55%), Postives = 98/145 (67.59%), Query Frame = 3
Query:  297 KVYFDVSIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFG--------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDI 707
            +V+FDV IG   G+  GRIV+ L+ D VP+TAENFRALCTGEKG G        +KG  FHR+IK FMIQ             SIYG  F+DENF   H   G++SMANAGPNTNGSQFFI TV TP LD +HVVFGQV++G+ +
Sbjct:   17 RVFFDVDIG---GERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGV 158          
The following BLAST results are available for this feature:
BLAST of CN188527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 230
Match NameE-valueIdentityDescription
PPIE_DROME9.814e-3954.73Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
CYPH_ALLCE9.814e-3966.39Peptidyl-prolyl cis-trans isomerase OS=Allium cepa... [more]
PPIB_SCHJA1.282e-3855.10Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
CYP5_RHIOR1.282e-3854.61Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
CYP6_RHIOR2.186e-3853.29Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
PPID_RHIOR3.729e-3858.62Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIA_PARPR8.308e-3858.52Peptidyl-prolyl cis-trans isomerase OS=Paramecium ... [more]
CYP40_ARATH8.308e-3857.14Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabi... [more]
PPID_RAT1.085e-3756.5540 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPID_MOUSE1.085e-3756.5540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188527 ID=CN188527; Name=CN188527; organism=Citrus sinensis; type=EST; length=710bp
GCGGTTCCATTCCATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATA
AATGTAGGCTGGGTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCC
CTCGCGTAATGCAATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAA
ATGCTTCATCATCCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTT
CCCCCTCTCACTCATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGT
TCGGGCCAGTGCTGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAG
TTTATTTCGATGTGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGA
ATCGTGATTGGATTGTACGGTGATGATGTGCCCCAAACGGCAGAGAACTT
CCGTGCTTTATGCACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACAT
TCCATCGTGTTATCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAA
GGCAATGGAACTGGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGA
GAACTTCAAATTGTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATG
CAGGTCCCAACACTAATGGCAGCCAATTTTTCATTTGTACGGTCAAGACA
CCATGGCTAGATCAGAGGCATGTTGTCTTTGGGCAAGTTTTGGAGGGCAT
GGACATTGTT
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