CN188525

Overview
NameCN188525
Unique NameCN188525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188525_ssr599 microsatellite CN188525_ssr599:599..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:274..967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.834e-49
Identity = 96/159 (60.38%), Postives = 116/159 (72.96%), Query Frame = 3
Query:   51 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGF-LSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            MS+IPS FG RR+NV +PFSLD+WDPF  + L ++   +    +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP+NA V++VKA MENGVLTVT            +I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.697e-48
Identity = 102/157 (64.97%), Postives = 115/157 (73.25%), Query Frame = 3
Query:   81 RRTNVFDPFSLDVWDPFDGFL-----SSALTNAPSSAR----ETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            RR+NVFDPFSLD+WDPFDGF      SS+ +  PS  R    ET+ FA ARIDWKETP+AHVFKAD+PGL+          G ILQISGER+KEQEEK D+WHRVERSSGKFLRRFRLPDNAK EQ+KASMENGVLTVT            +I+ISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGGSSSGSIFPSFPRGASSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQISG 161          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.450e-48
Identity = 98/160 (61.25%), Postives = 114/160 (71.25%), Query Frame = 3
Query:   51 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            MSLIPSIFGG R+NVFDPFSLD+WDPF  F      + P+S+   E S F N R+DWKET +AHV KAD+PGL+           R+LQISGER+ E+E+KND WHRV+RSSGKF+RRFRLP+NAKVEQVKA MENGVLTVT             IEISG
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDF------HVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVTIPKEEVKKSDVKPIEISG 154          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HSP12_SOLPE (17.6 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 6.450e-48
Identity = 101/159 (63.52%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   51 MSLIPSIFGGRR-TNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            MSLIP IFG RR T+VFDPFS+DV+DPF       L    S++ ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSTSVFDPFSIDVFDPF-----KELGFTVSNSGETSAFANTRIDWKETPEAHVFKADLPGLKKEEVKVEVEEDRVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEVNNPDVKSIEISG 154          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HSP11_HELAN (17.6 kDa class I heat shock protein OS=Helianthus annuus GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.100e-47
Identity = 90/139 (64.75%), Postives = 108/139 (77.70%), Query Frame = 3
Query:   51 MSLIPSIFGGRRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 467
            MS+IPS F  +R+N+FDPFSLD WDPF G +S+        ARET+   NARIDWKETP+AHV KADLPG++          GR+LQISGER +EQEEK+D WHRVERSSGKF+RRFRLP+NAK+++VKA MENGVLTV
Sbjct:    1 MSIIPSFFTSKRSNIFDPFSLDTWDPFQGIIST------EPARETAAIVNARIDWKETPEAHVLKADLPGMKKEEVKVEVEDGRVLQISGERCREQEEKDDTWHRVERSSGKFIRRFRLPENAKMDEVKAMMENGVLTV 133          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.877e-47
Identity = 95/157 (60.51%), Postives = 112/157 (71.34%), Query Frame = 3
Query:   81 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSS---------ARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            RR+NVFDPFSLD+WDPFDGF   + + +  S         + ET+ FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGERSKEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+++G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSRSSGSIFPSFPRGTSSETAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQVTG 161          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.451e-47
Identity = 93/148 (62.84%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   81 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA MENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.460e-47
Identity = 92/148 (62.16%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   81 RRTNVFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            RR+NVFDPFSLD+WDPFD    S +    +S  +T+ FANARIDWKETP++HVFKADLPG++          G +L ISG+RSKE+E+KNDKWHRVERSSG+F+RRFRLP+NAKV+QVKA +ENGVLTVT            AIEISG
Sbjct:    5 RRSNVFDPFSLDLWDPFDSVFRSVVP--ATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG 150          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 7.131e-47
Identity = 93/150 (62.00%), Postives = 110/150 (73.33%), Query Frame = 3
Query:   81 RRTNVFDPFSLDVWDPFDGFLSSALTNA--PSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            RR+NVFDPFSLD+WDPFDGF   + + +  P +  + + FA ARIDWKETP+AHVFKAD+PGL+          G +LQISGER KEQEEK DKWHRVERSSGKFLRRFRLP+N K EQ+KASMENGVLTVT            +I+I+G
Sbjct:    5 RRSNVFDPFSLDLWDPFDGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVLTVTVPKEEPKKPDVKSIQITG 154          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HSP11_SOLPE (17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.075e-46
Identity = 98/159 (61.64%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   51 MSLIPSIFGGRRTN-VFDPFSLDVWDPFDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 524
            MSLIP IFG RR++ +FDPFS+DV+DPF       L    +++ ETS FAN RIDWKETP+AHVFKADLPGL+           R+LQISGER+ E+E+KNDKW RVERSSGKF+RRFRLP+NAK++QVKASMENGVLTVT            +IEISG
Sbjct:    1 MSLIPRIFGDRRSSSMFDPFSIDVFDPF-----RELGFPGTNSGETSAFANTRIDWKETPEAHVFKADLPGLKLEEVKVEVEEDRVLQISGERNMEKEDKNDKWQRVERSSGKFMRRFRLPENAKMDQVKASMENGVLTVTVPKEEMKKPDVKSIEISG 154          
The following BLAST results are available for this feature:
BLAST of CN188525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP12_DAUCA5.834e-4960.3818.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ1.697e-4864.9717.9 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP15_SOYBN6.450e-4861.2517.6 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_SOLPE6.450e-4863.5217.6 kDa class I heat shock protein OS=Solanum per... [more]
HSP11_HELAN1.100e-4764.7517.6 kDa class I heat shock protein OS=Helianthus ... [more]
HS181_ORYSJ1.877e-4760.5118.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_ORYSJ2.451e-4762.8416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ5.460e-4762.1616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS174_ORYSJ7.131e-4762.0017.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HSP11_SOLPE2.075e-4661.6417.7 kDa class I heat shock protein OS=Solanum per... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188525 ID=CN188525; Name=CN188525; organism=Citrus sinensis; type=EST; length=694bp
GCGTACTTCTGAAGTTGTTGAGCATTTAATTAGCGCCCCACCTTGCCATA
ATGTCACTCATTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGTTCGA
TCCATTTTCATTAGATGTATGGGATCCTTTCGACGGGTTCTTGTCCTCTG
CCCTTACCAACGCGCCGTCTTCGGCTAGGGAAACATCCCAATTCGCCAAT
GCAAGAATTGACTGGAAAGAGACTCCTCAGGCTCATGTATTCAAGGCTGA
TCTTCCAGGGCTGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGGGCA
GGATTCTGCAGATAAGCGGGGAGAGGAGCAAGGAGCAGGAAGAGAAGAAT
GACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTT
CAGGTTGCCCGACAATGCTAAGGTGGAGCAGGTTAAGGCCAGCATGGAGA
ATGGTGTGCTCACAGTGACTGTTCCTAAACAGGAGGAGAAGAAACCTGAA
GTTAAGGCCATTGAGATCTCTGGCTAAGTGATAAGTGTAAATGTTTTCAA
GATTGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAAGCAAAGCCCTTG
TGTGTGTGTGTGTGTGTTTGCAAGAGCTTCCCTTCCCCCCTGTTTAATTT
GATGTGATTATGTTTGTGTGTTTGCAAGAGCTTCAGGAGCCAGT
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