CN188525

Overview
NameCN188525
Unique NameCN188525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188525_ssr599 microsatellite CN188525_ssr599:599..616. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6849 contig Csv1_Contig6849:274..967. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 40/87 (45.98%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  210 DWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 470
            D KE P A+ F  D+PGL            R+L ISGER +E+ E + K+ R+ER  GKF+R+F LPDNA ++++ A   +GVLTVT
Sbjct:   56 DVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREERE-DAKYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVLTVT 141          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.158e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  159 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 470
            N PS A  R+    A    D  E P A+VF  D+PG++            +L +SG+R ++ +E    K+ R+ER  GKF+R+F+LPDNA +E++ A+  +GVL VT
Sbjct:   30 NNPSRAYMRDAKAMAATPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVLKVT 136          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  195 ANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQI--------------SGERSKEQEEKND--KWHRVERSSGK---FLRRFRLPDNAKVEQVKASMENGVLTVT 470
            A   +DW+ETP AHVF+ DLPGL           G IL++              +G+ S E+EE+ND  +WH  ER++G+    + +FRLP++A  ++  A M +GVLTVT
Sbjct:   25 ARPPMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVLTVT 135          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 44/119 (36.97%), Postives = 59/119 (49.58%), Query Frame = 3
Query:  129 FDGFLSSALTNAPSSARETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGER-----SKEQE-EKNDKWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTV 467
            F G     L   P      S  A A +DW ETP +HV + ++PGL           G +L + G        KE+E EK+  WH  ER   +F R   LP   +VEQ++AS++NGVLTV
Sbjct:    6 FGGPFRRILYGRPFPPDWASASATAAMDWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVLTV 124          
BLAST of CN188525 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  159 NAPSSA--RETSQFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKND-KWHRVERSSGKFLRRFRLPDNAKVEQVKASMENGVLTVT 470
            N PS    R+    A    D  E P A+ F  D+PG++            +L +SGER +E +E    K+ R+ER  GKF+R+F+LP+NA ++++ A   +GVL VT
Sbjct:   29 NNPSRVYMRDAKAMAATPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVLKVT 135          
The following BLAST results are available for this feature:
BLAST of CN188525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP21_MAIZE5.158e-1345.9817.5 kDa class II heat shock protein OS=Zea mays P... [more]
HS177_ARATH5.158e-1338.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HS178_ORYSJ6.737e-1338.7417.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP16_ORYSJ1.501e-1236.9716.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS176_ARATH7.448e-1236.4517.6 kDa class II heat shock protein OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188525 ID=CN188525; Name=CN188525; organism=Citrus sinensis; type=EST; length=694bp
GCGTACTTCTGAAGTTGTTGAGCATTTAATTAGCGCCCCACCTTGCCATA
ATGTCACTCATTCCAAGCATCTTCGGTGGCCGAAGAACCAACGTGTTCGA
TCCATTTTCATTAGATGTATGGGATCCTTTCGACGGGTTCTTGTCCTCTG
CCCTTACCAACGCGCCGTCTTCGGCTAGGGAAACATCCCAATTCGCCAAT
GCAAGAATTGACTGGAAAGAGACTCCTCAGGCTCATGTATTCAAGGCTGA
TCTTCCAGGGCTGAGGAAAGAAGAAGTGAAAGTTGAGGTTGAAGAGGGCA
GGATTCTGCAGATAAGCGGGGAGAGGAGCAAGGAGCAGGAAGAGAAGAAT
GACAAGTGGCATCGCGTCGAGAGGAGCAGTGGCAAGTTCCTGAGGAGGTT
CAGGTTGCCCGACAATGCTAAGGTGGAGCAGGTTAAGGCCAGCATGGAGA
ATGGTGTGCTCACAGTGACTGTTCCTAAACAGGAGGAGAAGAAACCTGAA
GTTAAGGCCATTGAGATCTCTGGCTAAGTGATAAGTGTAAATGTTTTCAA
GATTGTGTCTTTGGTTTGCTAATAAATTTGGTACGAAAGCAAAGCCCTTG
TGTGTGTGTGTGTGTGTTTGCAAGAGCTTCCCTTCCCCCCTGTTTAATTT
GATGTGATTATGTTTGTGTGTTTGCAAGAGCTTCAGGAGCCAGT
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