CN188519

Overview
NameCN188519
Unique NameCN188519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188519_ssr525 microsatellite CN188519_ssr525:525..534. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2671 contig Csv1_Contig2671:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.000e-32
Identity = 71/136 (52.21%), Postives = 87/136 (63.97%), Query Frame = 1
Query:   55 MSLISNMLGDNN---------EPFDPFLSLVNKCPVLNTPT-----------DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI ++ G            + FDPF   +    + N P            DW+ETPEAHVF ADLPGL+K+EVKVEV++G +LQISGER  + E   D WHRVER  G+F RRF+LPENAK +E+KASMENGVL
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVL 136          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP14_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-E PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.117e-32
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1
Query:  136 LNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            ++T  DWKETPEAHVF AD+PGLKK+EVKV++++ RVLQISGER  + E   DTWHRVER  G+F RRF+LPENAK +EVKASMENGVL
Sbjct:   45 VSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVERSSGKFTRRFRLPENAKVNEVKASMENGVL 133          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.117e-32
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1
Query:  136 LNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +NT  DWKETP+AHVF ADLPGLKK+EVKVE++EG+VLQISGER  + E   D WHRVER  G+F+RRF+LPENAK DEVKA+M NGV+
Sbjct:   48 VNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVV 136          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 62/89 (69.66%), Postives = 75/89 (84.27%), Query Frame = 1
Query:  136 LNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            ++T  DWKETPEAHVF ADLPG+KK+EVKVE+++ RVLQISGER  + E   D WHR+ER  G+FMRRF+LPENAK D+VKA+MENGVL
Sbjct:   49 VSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVL 137          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1
Query:  139 NTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            N   DWKETPEAHVF ADLPGLKK+EVKVEV++  VLQISGER  + E   D WHRVER  G+FMRRF+LPENAK +EVKA+MENGVL
Sbjct:   51 NARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVL 138          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 8.728e-32
Identity = 71/132 (53.79%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   55 MSLISNMLGDNN-----EPF-----DPFLSLVNKC------PVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MS+I +   +N      +PF     DPF  L +         ++N   DW+ETPEAHVF ADLPGLKK+EVKVE++E  VL+ISGER  + E   DTWHRVER  G+F RRF+LPEN K D+VKA+MENGVL
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS16C_ORYSJ (16.9 kDa class I heat shock protein 3 OS=Oryza sativa subsp. japonica GN=HSP16.9C PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.140e-31
Identity = 70/111 (63.06%), Postives = 81/111 (72.97%), Query Frame = 1
Query:   91 EPFDP-FLSLV------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +PFD  F SLV      +     N   DWKETPE+HVF ADLPG+KK+EVKVEV+EG VL ISG+R  + E   D WHRVER  G+FMRRF+LPENAK D+VKASMENGVL
Sbjct:   18 DPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVL 128          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.539e-31
Identity = 62/88 (70.45%), Postives = 73/88 (82.95%), Query Frame = 1
Query:  139 NTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            N   DWKETPEAHVF ADLPG+KK+EVKVEV++G VL+ISG+R  + E   DTWHRVER  G+FMR+F+LPENAK D+VKA MENGVL
Sbjct:   54 NARIDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVL 141          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 4.332e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:  139 NTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            NT  DWKETP+AHVF ADLPGLKK+EVKVEV+EG+VLQISGER  + E   + WHRVE   G+F+RRF+LPENA  DEVKA MENGVL
Sbjct:   51 NTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVL 138          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 60/84 (71.43%), Postives = 72/84 (85.71%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKETPEAHVF AD+PGLKK+EVKVEVD+G +LQISGER  + E   D WHRVER  G+F+RRF+LP+NAK +++KASMENGVL
Sbjct:   57 DWKETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVL 140          
The following BLAST results are available for this feature:
BLAST of CN188519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS17C_ARATH3.000e-3252.2117.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HSP14_SOYBN5.117e-3270.7917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_DAUCA5.117e-3270.7917.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP12_MEDSA8.728e-3269.6618.2 kDa class I heat shock protein OS=Medicago sa... [more]
HS181_ARATH8.728e-3272.7318.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17B_ARATH8.728e-3253.7917.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS16C_ORYSJ1.140e-3163.0616.9 kDa class I heat shock protein 3 OS=Oryza sat... [more]
HSP11_CHERU2.539e-3170.4518.3 kDa class I heat shock protein OS=Chenopodium... [more]
HSP12_DAUCA4.332e-3171.5918.0 kDa class I heat shock protein OS=Daucus caro... [more]
HS17A_ORYSJ7.388e-3171.4317.9 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188519 ID=CN188519; Name=CN188519; organism=Citrus sinensis; type=EST; length=613bp
CCTTATAATCTGAAATCAGAAGCTAGCATATATCAATATCCTTGGTAACT
AGAAATGTCTCTCATTTCCAACATGTTGGGTGACAACAATGAGCCATTTG
ATCCATTCCTTTCACTGGTGAACAAGTGTCCGGTGCTCAACACGCCGACA
GACTGGAAAGAAACCCCAGAAGCCCACGTGTTCACCGCTGATCTTCCGGG
GCTGAAGAAAGATGAGGTCAAAGTTGAAGTTGACGAAGGCAGAGTCTTGC
AAATAAGCGGAGAGAGGAAAGCGGACGGCGAGAGTGATGGTGATACGTGG
CATAGGGTGGAACGGTGTCGTGGCAGGTTCATGAGGAGGTTTAAGCTGCC
GGAAAATGCGAAGACCGATGAAGTGAAGGCGTCCATGGAGAATGGAGTGC
TTGTGGTCAAAATACCAAAGCAAGAAGTCAAGAAACCGGAGAAGAAAGTG
ATTGAGATTCAGGGGAACTGAGGGTTTAATCAAATTAAGTTGATAGTGTG
TTGCTGAAATAAATCGTCTTACGTTGTGTGTGTGTTTGGTGTAATCAAGT
GTGATTCTTATTATTAATTTTTTTTTTTTCCCNATTAGCTTTTGTGTTCA
TGCATCCTTCTTG
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