CN188519

Overview
NameCN188519
Unique NameCN188519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 72/134 (53.73%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   55 MSLISNMLGDN---NEPFDPFLSLV---------------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI +  G+N   N  FDPF   V                   + N   DWKET EAHVF ADLPG+KK+EVKVE+++  VL+ISGER  + E   DTWHRVER  G+F R+FKLPEN K D+VKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVL 134          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.388e-31
Identity = 68/111 (61.26%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   91 EPFDP-FLSLV------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +PFD  F S+V      +     N   DWKETPE+HVF ADLPG+KK+EVKVEV+EG VL ISG+R  + E   D WHRVER  G+FMRRF+LPENAK D+VKA MENGVL
Sbjct:   19 DPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVL 129          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 9.650e-31
Identity = 72/134 (53.73%), Postives = 88/134 (65.67%), Query Frame = 1
Query:   55 MSLISNMLGD-NNEPFDPF-----------------LSLVNKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI ++ G   +  FDPF                 +S  N   V NT  DWKET EAHV  AD+PGLKK+EVKV++++ RVLQISGER  + E   DTWHRV+R  G+FMRRF+LPENAK ++VKA MENGVL
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFV-NTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVL 133          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.260e-30
Identity = 71/132 (53.79%), Postives = 85/132 (64.39%), Query Frame = 1
Query:   55 MSLISNMLGDN----NEPFDPFLSLV------------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            MSLI +  G+N    N  FDPF   V            +   + N   DWKET EAHVF ADLPG+KK+EVKVE+++  VL+ISGER  + E   DTWHRVER  G F R+F+LPEN K D+VKASMENGVL
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS177_ORYSJ (17.7 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.646e-30
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKETPE HVF AD+PGLKK+EVKVEVD+G +LQISGER  + E   D WHRVER  G+F+RRF+LPEN K +++KASMENGVL
Sbjct:   55 DWKETPEVHVFKADVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 138          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS16A_WHEAT (16.9 kDa class I heat shock protein 1 OS=Triticum aestivum GN=hsp16.9A PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.646e-30
Identity = 64/112 (57.14%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   91 EPFDPFLSLV--------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +PFD F S+V              N   DWKETPEAHVF  DLPG+KK+EVKVEV++G VL +SGER  + E   D WHRVER  G+F+RRF+LPE+AK +EVKA +ENGVL
Sbjct:   19 DPFDTFRSIVPAISGGSSETAAFANARVDWKETPEAHVFKVDLPGVKKEEVKVEVEDGNVLVVSGERSREKEDKNDKWHRVERSSGKFVRRFRLPEDAKVEEVKAGLENGVL 130          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.646e-30
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1
Query:   91 EPFDP-FLSLV------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +PFD  F S+V      +     N   DWKETPE+HVF ADLPG+KK+EVKVEV+EG VL ISG+R  + E   D WHRVER  G+FMRRF+LPENAK D+VKA +ENGVL
Sbjct:   19 DPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVL 129          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS181_ORYSJ (18.1 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.150e-30
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKETPEAHVF AD+PGLKK+EVKVEV++G VLQISGER  + E   D WHRVER  G+F+RRF+LPEN K +++KASMENGVL
Sbjct:   57 DWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 140          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS174_ORYSJ (17.4 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.4 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 4.789e-30
Identity = 60/84 (71.43%), Postives = 71/84 (84.52%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKETPEAHVF AD+PGLKK+EVKVEV++G VLQISGER  + E   D WHRVER  G+F+RRF+LPEN K +++KASMENGVL
Sbjct:   50 DWKETPEAHVFKADVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASMENGVL 133          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS16B_WHEAT (16.9 kDa class I heat shock protein 2 OS=Triticum aestivum GN=hsp16.9B PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.393e-29
Identity = 64/112 (57.14%), Postives = 78/112 (69.64%), Query Frame = 1
Query:   91 EPFDPFLSLV--------NKCPVLNTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +PFD F S+V              N   DWKETPEAHVF ADLPG+KK+EVKVEV++G VL +SGER  + E   D WHRVER  G+F+RRF+L E+AK +EVKA +ENGVL
Sbjct:   19 DPFDTFRSIVPAISGGGSETAAFANARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAGLENGVL 130          
The following BLAST results are available for this feature:
BLAST of CN188519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS178_ARATH7.388e-3153.7317.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HS16B_ORYSJ7.388e-3161.2616.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HSP15_SOYBN9.650e-3153.7317.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17A_ARATH1.260e-3053.7917.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS177_ORYSJ1.646e-3070.2417.7 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16A_WHEAT1.646e-3057.1416.9 kDa class I heat shock protein 1 OS=Triticum ... [more]
HS16A_ORYSJ1.646e-3060.3616.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]
HS181_ORYSJ2.150e-3071.4318.1 kDa class I heat shock protein OS=Oryza sativ... [more]
HS174_ORYSJ4.789e-3071.4317.4 kDa class I heat shock protein OS=Oryza sativ... [more]
HS16B_WHEAT1.393e-2957.1416.9 kDa class I heat shock protein 2 OS=Triticum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188519 ID=CN188519; Name=CN188519; organism=Citrus sinensis; type=EST; length=613bp
CCTTATAATCTGAAATCAGAAGCTAGCATATATCAATATCCTTGGTAACT
AGAAATGTCTCTCATTTCCAACATGTTGGGTGACAACAATGAGCCATTTG
ATCCATTCCTTTCACTGGTGAACAAGTGTCCGGTGCTCAACACGCCGACA
GACTGGAAAGAAACCCCAGAAGCCCACGTGTTCACCGCTGATCTTCCGGG
GCTGAAGAAAGATGAGGTCAAAGTTGAAGTTGACGAAGGCAGAGTCTTGC
AAATAAGCGGAGAGAGGAAAGCGGACGGCGAGAGTGATGGTGATACGTGG
CATAGGGTGGAACGGTGTCGTGGCAGGTTCATGAGGAGGTTTAAGCTGCC
GGAAAATGCGAAGACCGATGAAGTGAAGGCGTCCATGGAGAATGGAGTGC
TTGTGGTCAAAATACCAAAGCAAGAAGTCAAGAAACCGGAGAAGAAAGTG
ATTGAGATTCAGGGGAACTGAGGGTTTAATCAAATTAAGTTGATAGTGTG
TTGCTGAAATAAATCGTCTTACGTTGTGTGTGTGTTTGGTGTAATCAAGT
GTGATTCTTATTATTAATTTTTTTTTTTTCCCNATTAGCTTTTGTGTTCA
TGCATCCTTCTTG
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