CN188519

Overview
NameCN188519
Unique NameCN188519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS166_ORYSJ (16.6 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP16.6 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.393e-29
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   91 EPFDPFLSLVNKCPVL-NTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDG---DTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +PF    SL  +CPVL N   DWKETP AHVFTADLPG++KD+ KVEV++G VL ISGER  + + DG   + WH VER  G+F RRF+LP  A+ D+V ASM+NGVL
Sbjct:   22 DPFGAVRSLAERCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVISGERAREEDVDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASMDNGVL 129          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP41_PEA (22.7 kDa class IV heat shock protein OS=Pisum sativum GN=HSP22.7 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.304e-27
Identity = 54/84 (64.29%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKETPE HV   D+PGLKKD++K+EV+E RVL++SGERK + +  GD WHRVER  G+F R+FKLP+N   D VKA MENGVL
Sbjct:   78 DWKETPEGHVIMVDVPGLKKDDIKIEVEENRVLRVSGERKKEEDKKGDHWHRVERSYGKFWRQFKLPQNVDLDSVKAKMENGVL 161          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP41_SOYBN (22.0 kDa class IV heat shock protein OS=Glycine max GN=HSP22.0 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.453e-27
Identity = 53/84 (63.10%), Postives = 66/84 (78.57%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKETPE HV   D+PGLK++E+KVEV+E RVL++SGERK + E  GD WHRVER  G+F R+F+LP+N   D VKA +ENGVL
Sbjct:   70 DWKETPEGHVIMLDVPGLKREEIKVEVEENRVLRVSGERKKEEEKKGDHWHRVERSYGKFWRQFRLPQNVDLDSVKAKLENGVL 153          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP22_ARATH (22.0 kDa heat shock protein OS=Arabidopsis thaliana GN=HSP22.0 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.719e-25
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKET E H    D+PGLKKDEVK+EV+E  VL++SGERK + E  GD WHRVER  G+F R+FKLP+N   + VKA +ENGVL
Sbjct:   74 DWKETAEGHEIMLDIPGLKKDEVKIEVEENGVLRVSGERKREEEKKGDQWHRVERSYGKFWRQFKLPDNVDMESVKAKLENGVL 157          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS189_ORYSJ (18.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.9 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.650e-22
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKET  AHVF AD+PG++++EV+VEV+E +VL+ISG+R    E  G+ WHRVER   RF+R  +LP NA TD V A+++NGVL
Sbjct:   73 DWKETAAAHVFMADMPGVRREEVRVEVEEEKVLRISGQRARAAEEKGERWHRVERSSERFVRTVRLPPNANTDGVHAALDNGVL 156          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS219_ORYSJ (21.9 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP21.9 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 5.307e-21
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEG-RVLQISGERKA-------DGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DWKETPEAHV T D+PG+++ +V+VEVDE  RVL++SGER+        +GE DG  WHR ER  GRF RRF++P  A    V A +++GVL
Sbjct:   75 DWKETPEAHVVTVDVPGVRRGDVRVEVDEASRVLRVSGERRRAGAAEEEEGERDGVRWHRAERAAGRFWRRFRMPPGADVGRVAARLDDGVL 166          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS232_ORYSJ (23.2 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP23.2 PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 5.868e-20
Identity = 43/88 (48.86%), Postives = 65/88 (73.86%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESD----GDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DW+ET +AH    D+PG++K++++VEV++ RVL+ISGER+ +  ++    GD WHR ER  GRF R+ +LP+NA  D + AS++NGVL
Sbjct:   79 DWRETGDAHEVVVDVPGMRKEDLRVEVEDNRVLRISGERRREETTEQKGGGDHWHREERSYGRFWRQLRLPDNADLDSIAASLDNGVL 166          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP21_SOLPE (17.3 kDa class II heat shock protein OS=Solanum peruvianum PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.001e-19
Identity = 46/87 (52.87%), Postives = 62/87 (71.26%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE P ++VF  D+PGLK  ++KV+V+E  VL ISGERK + E +G  + R+ER  G+FMR+F LPENA TD + A  ++GVL
Sbjct:   46 TPADVKEYPNSYVFVVDMPGLKSGDIKVQVEEDNVLLISGERKREEEKEGAKFIRMERRVGKFMRKFSLPENANTDAISAVCQDGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP21_SOYBN (17.9 kDa class II heat shock protein OS=Glycine max GN=HSP17.9-D PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.473e-19
Identity = 50/117 (42.74%), Postives = 70/117 (59.83%), Query Frame = 1
Query:   55 MSLISNMLGDNNEPFDPFLSLVNKCPVLN-TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            M +  +  GDN     P  S V     +  TP D KE P ++VF  D+PGLK  ++KV+V++  +L I GERK D E +G  + R+ER  G+ MR+F LPENA TD + A  ++GVL
Sbjct:   20 MDMSEDGAGDNKTHNAPTWSYVRDAKAMAATPADVKEYPNSYVFEIDMPGLKSGDIKVQVEDDNLLLICGERKRDEEKEGAKYLRMERRVGKLMRKFVLPENANTDAISAVCQDGVL 136          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP21_HELAN (17.9 kDa class II heat shock protein OS=Helianthus annuus GN=HSP17.9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.598e-17
Identity = 41/87 (47.13%), Postives = 61/87 (70.11%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE P ++VF  D+PGLK  ++KV+V+   VL ISG+R  + E +G  + R+ER  G+FM++F LPE+A TD++ A  ++GVL
Sbjct:   51 TPADVKECPNSYVFIVDMPGLKSGDIKVQVERDNVLVISGKRNREEEKEGVKYVRMERRMGKFMKKFALPEDANTDKISAICQDGVL 137          
The following BLAST results are available for this feature:
BLAST of CN188519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS166_ORYSJ1.393e-2958.3316.6 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP41_PEA1.304e-2764.2922.7 kDa class IV heat shock protein OS=Pisum sati... [more]
HSP41_SOYBN8.453e-2763.1022.0 kDa class IV heat shock protein OS=Glycine ma... [more]
HSP22_ARATH2.719e-2561.9022.0 kDa heat shock protein OS=Arabidopsis thalian... [more]
HS189_ORYSJ1.650e-2257.1418.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS219_ORYSJ5.307e-2153.2621.9 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS232_ORYSJ5.868e-2048.8623.2 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HSP21_SOLPE1.001e-1952.8717.3 kDa class II heat shock protein OS=Solanum pe... [more]
HSP21_SOYBN8.473e-1942.7417.9 kDa class II heat shock protein OS=Glycine ma... [more]
HSP21_HELAN1.598e-1747.1317.9 kDa class II heat shock protein OS=Helianthus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188519 ID=CN188519; Name=CN188519; organism=Citrus sinensis; type=EST; length=613bp
CCTTATAATCTGAAATCAGAAGCTAGCATATATCAATATCCTTGGTAACT
AGAAATGTCTCTCATTTCCAACATGTTGGGTGACAACAATGAGCCATTTG
ATCCATTCCTTTCACTGGTGAACAAGTGTCCGGTGCTCAACACGCCGACA
GACTGGAAAGAAACCCCAGAAGCCCACGTGTTCACCGCTGATCTTCCGGG
GCTGAAGAAAGATGAGGTCAAAGTTGAAGTTGACGAAGGCAGAGTCTTGC
AAATAAGCGGAGAGAGGAAAGCGGACGGCGAGAGTGATGGTGATACGTGG
CATAGGGTGGAACGGTGTCGTGGCAGGTTCATGAGGAGGTTTAAGCTGCC
GGAAAATGCGAAGACCGATGAAGTGAAGGCGTCCATGGAGAATGGAGTGC
TTGTGGTCAAAATACCAAAGCAAGAAGTCAAGAAACCGGAGAAGAAAGTG
ATTGAGATTCAGGGGAACTGAGGGTTTAATCAAATTAAGTTGATAGTGTG
TTGCTGAAATAAATCGTCTTACGTTGTGTGTGTGTTTGGTGTAATCAAGT
GTGATTCTTATTATTAATTTTTTTTTTTTCCCNATTAGCTTTTGTGTTCA
TGCATCCTTCTTG
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