CN188519

Overview
NameCN188519
Unique NameCN188519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188519_ssr525 microsatellite CN188519_ssr525:525..534. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2671 contig Csv1_Contig2671:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS17B_ORYSJ (17.9 kDa heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP17.9B PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.649e-17
Identity = 47/89 (52.81%), Postives = 60/89 (67.42%), Query Frame = 1
Query:  139 NTPTDWKETPEAHVFTADLP-GLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            NT  + +ET EA+VF ADLP G+KK+EV+VEVDEG VL I+GER    E  G   H +ER    F  RF LP++A  D V+ASM+ G+L
Sbjct:   40 NTYIESRETAEAYVFRADLPAGVKKEEVRVEVDEGNVLVITGERSVRREEKGQRSHHIERSCATFFGRFHLPDDAVVDLVRASMDGGML 128          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS176_ARATH (17.6 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.6 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.036e-16
Identity = 42/88 (47.73%), Postives = 61/88 (69.32%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADG-ESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D  E P A+ F  D+PG+K DE+KV+V+   VL +SGER+ +  E++G  + R+ER  G+FMR+F+LPENA  D++ A   +GVL
Sbjct:   45 TPADVIEHPNAYAFVVDMPGIKGDEIKVQVENDNVLVVSGERQRENKENEGVKYVRMERRMGKFMRKFQLPENADLDKISAVCHDGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP22_IPONI (18.8 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.767e-16
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGER--KADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE P ++VF AD+PG+K  E+KV+V++  VL +SGER  +   E DG  + R+ER  G+FMR+F LPENA  + + A  ++GVL
Sbjct:   56 TPADVKEYPNSYVFIADMPGVKAAEIKVQVEDDNVLVVSGERTEREKDEKDGVKYLRMERRVGKFMRKFVLPENANVEAINAVYQDGVL 144          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP21_PEA (17.1 kDa class II heat shock protein OS=Pisum sativum GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.307e-16
Identity = 40/87 (45.98%), Postives = 60/87 (68.97%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE P ++VF  D+PG+K  ++KV+V++  VL ISGERK + E +G  + ++ER  G+ MR+F LPENA  + + A  ++GVL
Sbjct:   43 TPADVKEHPNSYVFMVDMPGVKSGDIKVQVEDENVLLISGERKREEEKEGVKYLKMERRIGKLMRKFVLPENANIEAISAISQDGVL 129          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP21_IPONI (17.2 kDa class II heat shock protein OS=Ipomoea nil GN=SHSP-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.307e-16
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADG-ESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE P ++VF  D+PGLK  ++KV+VD   VL ISGERK +  E +G  + R+ER  G+ MR+F LPENA  +++ A  ++GVL
Sbjct:   45 TPADVKEYPNSYVFIIDMPGLKSGDIKVQVDGDNVLSISGERKREAEEKEGAKYVRMERRVGKLMRKFVLPENANKEKITAVCQDGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS177_ARATH (17.7 kDa class II heat shock protein OS=Arabidopsis thaliana GN=HSP17.7 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 39/88 (44.32%), Postives = 64/88 (72.73%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADG-ESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D  E P+A+VF  D+PG+K DE++V+++   VL +SG+R+ D  E++G  + R+ER  G+FMR+F+LP+NA  +++ A+  +GVL
Sbjct:   46 TPADVIEHPDAYVFAVDMPGIKGDEIQVQIENENVLVVSGKRQRDNKENEGVKFVRMERRMGKFMRKFQLPDNADLEKISAACNDGVL 133          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP22_MAIZE (17.8 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.140e-16
Identity = 40/87 (45.98%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE P A+ F  D+PGL   +++V+V++ RVL +SGER+ +   D   + R+ER  G+FMR+F LP+NA  D+V A   +GVL
Sbjct:   55 TPADVKELPGAYAFVVDMPGLGTGDIRVQVEDERVLVVSGERRREEREDDAKYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVL 141          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP18_ORYSJ (18.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP18.0 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.714e-16
Identity = 41/91 (45.05%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADG----ESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D K+ P A+ F  D+PGLK  ++KV+V+E R+L ISGER+  G    + +   + R+ER  G+FMR+F LP+NA  D++ A  ++GVL
Sbjct:   53 TPADVKDLPGAYAFVVDMPGLKSSDIKVQVEEERLLVISGERRRGGGEEEKEESCKYLRMERRMGKFMRKFVLPDNADVDKISAVCQDGVL 143          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP21_MAIZE (17.5 kDa class II heat shock protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE P A+ F  D+PGL   ++KV+V++ RVL ISGER+ +   D   + R+ER  G+FMR+F LP+NA  D++ A   +GVL
Sbjct:   53 TPADVKELPGAYAFVVDMPGLGTGDIKVQVEDERVLVISGERRREEREDA-KYLRMERRMGKFMRKFVLPDNADMDKISAVCRDGVL 138          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP12_SOYBN (Class I heat shock protein (Fragment) OS=Glycine max GN=HSP6834-A PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 37/53 (69.81%), Postives = 43/53 (81.13%), Query Frame = 1
Query:  244 VLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            +LQISGER  + E   DTWHRVER  G+FMR F+LP+NAK D+VKASMENGVL
Sbjct:    1 ILQISGERNVEKEDKNDTWHRVERSSGKFMRSFRLPDNAKVDQVKASMENGVL 53          
The following BLAST results are available for this feature:
BLAST of CN188519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS17B_ORYSJ4.649e-1752.8117.9 kDa heat shock protein 2 OS=Oryza sativa subs... [more]
HS176_ARATH1.036e-1647.7317.6 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_IPONI1.767e-1648.3118.8 kDa class II heat shock protein OS=Ipomoea ni... [more]
HSP21_PEA2.307e-1645.9817.1 kDa class II heat shock protein OS=Pisum sati... [more]
HSP21_IPONI2.307e-1648.8617.2 kDa class II heat shock protein OS=Ipomoea ni... [more]
HS177_ARATH3.936e-1644.3217.7 kDa class II heat shock protein OS=Arabidopsi... [more]
HSP22_MAIZE5.140e-1645.9817.8 kDa class II heat shock protein OS=Zea mays P... [more]
HSP18_ORYSJ6.714e-1645.0518.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP21_MAIZE2.551e-1547.1317.5 kDa class II heat shock protein OS=Zea mays P... [more]
HSP12_SOYBN2.551e-1569.81Class I heat shock protein (Fragment) OS=Glycine m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188519 ID=CN188519; Name=CN188519; organism=Citrus sinensis; type=EST; length=613bp
CCTTATAATCTGAAATCAGAAGCTAGCATATATCAATATCCTTGGTAACT
AGAAATGTCTCTCATTTCCAACATGTTGGGTGACAACAATGAGCCATTTG
ATCCATTCCTTTCACTGGTGAACAAGTGTCCGGTGCTCAACACGCCGACA
GACTGGAAAGAAACCCCAGAAGCCCACGTGTTCACCGCTGATCTTCCGGG
GCTGAAGAAAGATGAGGTCAAAGTTGAAGTTGACGAAGGCAGAGTCTTGC
AAATAAGCGGAGAGAGGAAAGCGGACGGCGAGAGTGATGGTGATACGTGG
CATAGGGTGGAACGGTGTCGTGGCAGGTTCATGAGGAGGTTTAAGCTGCC
GGAAAATGCGAAGACCGATGAAGTGAAGGCGTCCATGGAGAATGGAGTGC
TTGTGGTCAAAATACCAAAGCAAGAAGTCAAGAAACCGGAGAAGAAAGTG
ATTGAGATTCAGGGGAACTGAGGGTTTAATCAAATTAAGTTGATAGTGTG
TTGCTGAAATAAATCGTCTTACGTTGTGTGTGTGTTTGGTGTAATCAAGT
GTGATTCTTATTATTAATTTTTTTTTTTTCCCNATTAGCTTTTGTGTTCA
TGCATCCTTCTTG
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