CN188519

Overview
NameCN188519
Unique NameCN188519
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length613
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188519_ssr525 microsatellite CN188519_ssr525:525..534. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2671 contig Csv1_Contig2671:1..613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS178_ORYSJ (17.8 kDa heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.8 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.551e-15
Identity = 49/105 (46.67%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  145 PTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQI--SGER----------KADG----ESDGDTWHRVERCRGR---FMRRFKLPENAKTDEVKASMENGVL 402
            P DW+ETP AHVF  DLPGL KD+V VEV +G +L++   GE           KA G    E+DG  WH  ER  GR    + +F+LPE+A  DE  A M +GVL
Sbjct:   28 PMDWRETPVAHVFEMDLPGLAKDQVAVEVVDGHILRVRAGGEHEDANNAAKAGKASGEEEEENDGVRWHCRERAAGRRRAAVTQFRLPEDAAADEASARMADGVL 132          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS157_ARATH (15.7 kDa heat shock protein, peroxisomal OS=Arabidopsis thaliana GN=HSP15.7 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.332e-15
Identity = 38/89 (42.70%), Postives = 56/89 (62.92%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVER-----CRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DW E+  +H+F  ++PG  K+++KV+++EG VL I GE   + + +   WH  ER         F+RR +LPEN K D+VKA +ENGVL
Sbjct:   25 DWMESNNSHIFKINVPGYNKEDIKVQIEEGNVLSIRGEGIKEEKKENLVWHVAEREAFSGGGSEFLRRIELPENVKVDQVKAYVENGVL 113          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP23_MAIZE (17.0 kDa class II heat shock protein OS=Zea mays GN=HSP18 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.160e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 1
Query:  142 TPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            TP D KE   A+ F  D+PGL   +++V+V++ RVL ISGER+ +   D   + R+ER  G+FMR+F LP+NA  D+V A   +GVL
Sbjct:   46 TPADVKELAGAYAFVVDMPGLSTGDIRVQVEDERVLVISGERRREEREDA-KYLRMERRMGKFMRKFVLPDNADVDKVAAVCRDGVL 131          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP19_ORYSJ (19.0 kDa class II heat shock protein OS=Oryza sativa subsp. japonica GN=HSP19.0 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 45/95 (47.37%), Postives = 61/95 (64.21%), Query Frame = 1
Query:  139 NTPTDWKE--TPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERK---ADGESDGD--TWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            NTP D KE     A V   D+PG+   +V+VEV++G VL ISGER+    DG+  G+   + R+ER  G+FMRRF LPE+A  D V+A  ++GVL
Sbjct:   48 NTPMDVKELRASGALVLAVDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRAEYKDGVL 142          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HSP16_ORYSJ (16.0 kDa heat shock protein, peroxisomal OS=Oryza sativa subsp. japonica GN=HSP16.0 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.072e-13
Identity = 38/91 (41.76%), Postives = 56/91 (61.54%), Query Frame = 1
Query:  151 DWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISG-------ERKADGESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            DW ETP +HV   ++PGL KD+VKV+V++G VL + G       E++ + E D   WH  ER R  F R   LP   + ++++AS++NGVL
Sbjct:   33 DWVETPTSHVLRINVPGLGKDDVKVQVEDGNVLTVRGAAPHAAAEKEREREKD-VVWHVAERGRPEFAREVALPAEVRVEQIRASVDNGVL 122          
BLAST of CN188519 vs. ExPASy Swiss-Prot
Match: HS22C_CHLRE (Heat shock 22 kDa protein, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.310e-11
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  139 NTPTDWKETPEAHVFTADLPGLKKDEVKVEVDEGRVLQISGERKADG---ESDGDTWHRVERCRGRFMRRFKLPENAKTDEVKASMENGVL 402
            + P D  E+P A    AD PG+  D+VKVE+ EG VL ++GERK      E+ G  W R ER    F R F LPENA  D + A+M+ GVL
Sbjct:   46 HAPMDIIESPTAFELHADAPGMGPDDVKVELQEG-VLMVTGERKLSHTTKEAGGKVW-RSERTAYSFSRAFSLPENANPDGITAAMDKGVL 134          
The following BLAST results are available for this feature:
BLAST of CN188519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
HS178_ORYSJ2.551e-1546.6717.8 kDa heat shock protein OS=Oryza sativa subsp.... [more]
HS157_ARATH3.332e-1542.7015.7 kDa heat shock protein, peroxisomal OS=Arabid... [more]
HSP23_MAIZE2.160e-1445.9817.0 kDa class II heat shock protein OS=Zea mays G... [more]
HSP19_ORYSJ1.072e-1347.3719.0 kDa class II heat shock protein OS=Oryza sati... [more]
HSP16_ORYSJ1.072e-1341.7616.0 kDa heat shock protein, peroxisomal OS=Oryza ... [more]
HS22C_CHLRE1.310e-1146.15Heat shock 22 kDa protein, chloroplastic OS=Chlamy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188519 ID=CN188519; Name=CN188519; organism=Citrus sinensis; type=EST; length=613bp
CCTTATAATCTGAAATCAGAAGCTAGCATATATCAATATCCTTGGTAACT
AGAAATGTCTCTCATTTCCAACATGTTGGGTGACAACAATGAGCCATTTG
ATCCATTCCTTTCACTGGTGAACAAGTGTCCGGTGCTCAACACGCCGACA
GACTGGAAAGAAACCCCAGAAGCCCACGTGTTCACCGCTGATCTTCCGGG
GCTGAAGAAAGATGAGGTCAAAGTTGAAGTTGACGAAGGCAGAGTCTTGC
AAATAAGCGGAGAGAGGAAAGCGGACGGCGAGAGTGATGGTGATACGTGG
CATAGGGTGGAACGGTGTCGTGGCAGGTTCATGAGGAGGTTTAAGCTGCC
GGAAAATGCGAAGACCGATGAAGTGAAGGCGTCCATGGAGAATGGAGTGC
TTGTGGTCAAAATACCAAAGCAAGAAGTCAAGAAACCGGAGAAGAAAGTG
ATTGAGATTCAGGGGAACTGAGGGTTTAATCAAATTAAGTTGATAGTGTG
TTGCTGAAATAAATCGTCTTACGTTGTGTGTGTGTTTGGTGTAATCAAGT
GTGATTCTTATTATTAATTTTTTTTTTTTCCCNATTAGCTTTTGTGTTCA
TGCATCCTTCTTG
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