CN188516

Overview
NameCN188516
Unique NameCN188516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188516 vs. ExPASy Swiss-Prot
Match: SAP10_ARATH (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  269 KEANVEKRVVNRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVR 481
            +E  V+KR   RC  C+RKVG+ GF+CRCG +FCG HRY + H C +DYK +GR A+A + P+I+A K+ R
Sbjct:   62 EEEPVKKR---RCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKLQR 129          
BLAST of CN188516 vs. ExPASy Swiss-Prot
Match: SAP10_ORYSJ (Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Oryza sativa subsp. japonica GN=SAP10 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.535e-15
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = -3
Query:  266 NRCSGCRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 451
            NRC  CR+KVGL GF CRCG +FCG H       C++DYK+AGR+AIAR NP++ A KI ++
Sbjct:   97 NRCKACRKKVGLLGFPCRCGGMFCGAHA------CAFDYKAAGREAIARHNPLVVAPKINKI 152          
BLAST of CN188516 vs. ExPASy Swiss-Prot
Match: SAP8_ARATH (Putative zinc finger A20 and AN1 domain-containing stress-associated protein 8 OS=Arabidopsis thaliana GN=SAP8 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.331e-14
Identity = 31/57 (54.39%), Postives = 40/57 (70.18%), Query Frame = -3
Query:  266 CRRKVGLTGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 436
            C++KVGL GF CRCG LF   HRY + H C  DYKSA  D +A++NPV+K  K+ R+
Sbjct:   69 CKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYKSAAIDVLAKQNPVVKGDKLFRL 125          
BLAST of CN188516 vs. ExPASy Swiss-Prot
Match: ANUB1_HUMAN (AN1-type zinc finger and ubiquitin domain-containing protein 1 OS=Homo sapiens GN=ANUBL1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.424e-13
Identity = 31/68 (45.59%), Postives = 44/68 (64.71%), Query Frame = -3
Query:  266 EKRVVNRCSGCRRKVGL-TGFRCRCGELFCGEHRYSDRHDCSYDYKSAGRDAIARENPVIKAAKIVRV 466
            +K+  N C  C +K GL + + CRCG  FC  HRY++ H C+YDYKSAGR  +   NPV+ A K+ ++
Sbjct:  660 KKKTTNHCFLCGKKTGLASSYECRCGNNFCASHRYAETHGCTYDYKSAGRRYLHEANPVVNAPKLPKI 727          
The following BLAST results are available for this feature:
BLAST of CN188516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SAP10_ARATH1.793e-1652.11Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP10_ORYSJ7.535e-1556.45Zinc finger A20 and AN1 domain-containing stress-a... [more]
SAP8_ARATH8.331e-1454.39Putative zinc finger A20 and AN1 domain-containing... [more]
ANUB1_HUMAN2.424e-1345.59AN1-type zinc finger and ubiquitin domain-containi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006D06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188516 ID=CN188516; Name=CN188516; organism=Citrus sinensis; type=EST; length=714bp
TTTTTTTTTTTTTTTTTAACCTAAAACCACAATAATCCTCTTTCTATTTC
TGAAGAAACAAACCTCTAGAAAAGAAAGAAAATTATAAATTATCGAAAGA
GAAACAATTCATAAATCTGATCAACTCTCTCTCTAAAACCCTCTTTCGAT
CCTTTGATCACCATATTCCTGAGGAAGAGATCTGGCGAAATGACATCGTT
TCATGATGTGTATAAATTGATCTGAATTTTTGACCTTTCAATCGTGTTTT
CAAATTAAGCTTTCAAACTCTAACGATCTTGGCAGCTTTGATCACCGGAT
TTTCTCTCGCGATGGCGTCGCGACCGGCCGATTTATAATCATAGCTGCAA
TCGTGACGATCGGAGTACCGATGTTCGCCGCAGAACAGCTCCCCGCAGCG
ACATCTAAATCCGGTCAATCCAACCTTTCGTCGACAACCGGAGCACCGAT
TCACAACTCGTTTCTCTACGTTGGCTTCCTTCTCTCGCCGATCCGTCAAC
TCCTGATTTTGACCGGTCGTACCGGCAGCATCGGATGACCCAGACCGGAT
GATAGGCCGAGATCTCAAAGATTTCTCGCTAGAAAACTTTATGATCGCTA
CACCGCTTCCTCCGCCGCCGCCGCCGCCCGTACTCGAACCAGCAACGGCG
CTTGCGGTGGTGGTAGCGGTTGCGTTGAAACATTTCTGGCACATATTATT
TGTGGCTGGATTTC
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