CN188510

Overview
NameCN188510
Unique NameCN188510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:87..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UE2NL_HUMAN (Putative ubiquitin-conjugating enzyme E2 N-like OS=Homo sapiens GN=UBE2NL PE=5 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 1.053e-59
Identity = 110/148 (74.32%), Postives = 127/148 (85.81%), Query Frame = -2
Query:  233 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQ-SPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 673
            + LP RIIKETQRLL+EP PGI A P E N RYF+V+I G ++ SP+EGG FK EL L EEYPMAAPKVRF+TKIYHPN+DKL RI LDILKDKWSPALQIRTVLLSIQALL+APNPDDPL+ ++ + WKTNEA+A+ETA+ WTRLYA
Sbjct:    2 AELPHRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEYPMAAPKVRFMTKIYHPNVDKLERISLDILKDKWSPALQIRTVLLSIQALLNAPNPDDPLANDVVEQWKTNEAQAIETARAWTRLYA 149          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.288e-57
Identity = 101/147 (68.71%), Postives = 127/147 (86.39%), Query Frame = -2
Query:  233 SNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 673
            ++LP+RIIKET++L+S+P PGI+A P +DN+RYF V I GP QSPYE G+F+LEL+LP++YPM APKVRFLTKIYHPNID+LGRICLD+LK  WSPALQIRTVLLSIQALL++PNP+DPL+ ++A+ W  NE  A   A+EWT+LYA
Sbjct:    2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 5.981e-55
Identity = 99/145 (68.28%), Postives = 116/145 (80.00%), Query Frame = -2
Query:  233 LPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 667
            LP+RIIKE + L  +P PGI A+P+EDN+RYF + + GP QS YEGG F LELFLP+EYPM  P VRFLTKIYHPN+DKLGRICL  LK  WSPALQIRTVLLSIQAL+ APNPDDPL  ++AK WK NE +A+  A+EWT+ YA
Sbjct:    3 LPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYPMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYA 147          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.306e-37
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D++ ++   I+GP+ SPY GGVF L +  P +YP   PKV F TKIYHPNI+  G ICLDILKD+WSPAL +  VLLSI +LL+  NPDDPL   IA+ +KT++A+   TAKEWT+ YA
Sbjct:    5 KRIAKELSDLGRDPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYA 147          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.624e-37
Identity = 74/145 (51.03%), Postives = 98/145 (67.59%), Query Frame = -2
Query:  227 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 661
            +RI+KE + L  +P    SA P  ++M ++   I+GPT SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ A+   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2T_XENLA (Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevis GN=ube2t PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.345e-37
Identity = 77/146 (52.74%), Postives = 93/146 (63.70%), Query Frame = -2
Query:  233 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 658
            R+ +E Q L  EP PG+    +E NM      I+G + SPYEGG+F LE+ +PE YP   PK+RFLT IYHPNID  GRICLDIL    K  W PAL I TVL SIQ L+S PNPDDPL  +I+  +K N A     AK+WT  +A
Sbjct:    6 RLKRELQLLNKEPPPGVICWQNESNMDDLRAQIIGGSGSPYEGGIFNLEIIVPERYPFEPPKIRFLTPIYHPNIDSAGRICLDILKLPPKGAWRPALNISTVLTSIQLLMSEPNPDDPLMADISSEFKYNRAVFFSNAKKWTEKHA 151          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.593e-37
Identity = 73/145 (50.34%), Postives = 98/145 (67.59%), Query Frame = -2
Query:  227 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 661
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK+YHPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ ++   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.253e-36
Identity = 73/145 (50.34%), Postives = 98/145 (67.59%), Query Frame = -2
Query:  227 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 661
            +RI+KE + L  +P    SA P  ++M ++   I+GP +SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ A+   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.636e-36
Identity = 72/145 (49.66%), Postives = 98/145 (67.59%), Query Frame = -2
Query:  227 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 661
            +RI+KE + L  +P    SA P  ++M ++   I+GP+ SPY GGVF + +  P +YP   PKV F TK++HPN++  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT+ A+   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.646e-36
Identity = 72/145 (49.66%), Postives = 99/145 (68.28%), Query Frame = -2
Query:  227 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 661
            +RI+KE + L  +P    SA P  ++M ++   I+GP++SPY GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +KT++ +   TA+ WT+ YA G
Sbjct:    4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
The following BLAST results are available for this feature:
BLAST of CN188510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UE2NL_HUMAN1.053e-5974.32Putative ubiquitin-conjugating enzyme E2 N-like OS... [more]
UBC13_YEAST1.288e-5768.71Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBC13_SCHPO5.981e-5568.28Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC5_YEAST4.306e-3753.15Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UBC4_SOLLC5.624e-3751.03Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBE2T_XENLA7.345e-3752.74Ubiquitin-conjugating enzyme E2 T OS=Xenopus laevi... [more]
UBC11_ARATH9.593e-3750.34Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC8_ARATH1.253e-3650.34Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC28_ARATH1.636e-3649.66Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC10_ARATH3.646e-3649.66Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0006C22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188510 ID=CN188510; Name=CN188510; organism=Citrus sinensis; type=EST; length=731bp
ATTAAACAATGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCC
ACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATG
TCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATT
TTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAG
TGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCA
TTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGG
CAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCT
TGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTC
TTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGAT
ATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATATTCTTCA
GGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGCGT
CGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAG
ATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGTTTCCTTG
ATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCGATTTTTT
TTGTTTTTTAACCTTCTGAAAACCCAAGGAA
back to top