CN188510

Overview
NameCN188510
Unique NameCN188510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 59/129 (45.74%), Postives = 77/129 (59.69%), Query Frame = -2
Query:  290 NSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHW 676
            N  + +R+ KE   L+     GISA P  +N+  +   I GP  + Y G  ++L L  P  YP AAP V+FLT  +HPN+D  G ICLDILKDKWS    +RT+LLSIQ+LL  PN + PL+   A  W
Sbjct:   30 NHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMW 158          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 51/137 (37.23%), Postives = 88/137 (64.23%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  VL SIQ+LL+ PN     +   +  +K N  E  +  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRE 143          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.619e-26
Identity = 50/137 (36.50%), Postives = 90/137 (65.69%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            RR++++ +R+  +   G+SASP  DN+  +N +I+GP  +P+E G F+L L   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   + ++L SIQ+LL+ PN   P +   A  +K + ++ ++  +E
Sbjct:    7 RRLMRDFKRMQQDAPSGVSASPLPDNVMSWNAVIIGPADTPFEDGTFRLILQFDEQYPNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRE 143          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.467e-26
Identity = 57/155 (36.77%), Postives = 94/155 (60.65%), Query Frame = -2
Query:  230 MANSNLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 682
            M++ NLP    +R++KE + L S    GI+  P E+++     ++ GP  +PYEGG FK  L L  ++P + PK  F+TKI+HPN+ K G IC++ LK  W+  L ++ +LL+I+ LL  PN +  L+E+ ++    N  +  + AK +T ++AS
Sbjct:    1 MSSENLPPDVIKRVVKELKELNSSTLEGITLLPCEEDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKLFTSIHAS 155          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 60/150 (40.00%), Postives = 88/150 (58.67%), Query Frame = -2
Query:  233 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 670
            NLP    R++ KE   L  +P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P A PK  FLTKI+HPN+   G IC+++LK  W   L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++A
Sbjct:    7 NLPPHVIRQVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRARLMTEIHA 156          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 62/135 (45.93%), Postives = 80/135 (59.26%), Query Frame = -2
Query:  275 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEA 679
            A   + +R+ +E   L++    GISA P  DN+  +   I G   + YE   +KL L  P  YP  AP V+FLT  YHPN+D  G ICLDILKDKWS    +RT+LLSIQ+LL  PN D PL+ + A+ WK   A
Sbjct:   27 ARGPVGKRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 62/135 (45.93%), Postives = 79/135 (58.52%), Query Frame = -2
Query:  275 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEA 679
            A   + +R+ +E   L+     GISA P  DN+  +   I G   + YE   +KL L  P  YP  AP V+FLT  YHPN+D  G ICLDILKDKWS    +RT+LLSIQ+LL  PN D PL+ + A+ WK   A
Sbjct:   27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2C_DICDI (Probable ubiquitin-conjugating enzyme E2 C OS=Dictyostelium discoideum GN=ube2c PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = -2
Query:  278 NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNE 670
            ++ +R+  E   L+  P+PGISA P  DN+  +   I G   + YE   FK+ L  P +YP   P V+F T+ +HPN+D  G ICLDILKDKWSP   +R++L+SIQ+LL  PN + PL+   A  W   +
Sbjct:    6 SVSKRLQSELMNLMMGPSPGISAFPDGDNIFNWIGTIQGAKDTVYEQMEFKMSLKFPTDYPYKPPTVKFETQCFHPNVDNNGNICLDILKDKWSPVYNVRSLLISIQSLLGEPNNESPLNSYAASLWSNQD 136          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 62/135 (45.93%), Postives = 79/135 (58.52%), Query Frame = -2
Query:  275 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEA 679
            A   + +R+ +E   L+     GISA P  DN+  +   I G   + YE   +KL L  P  YP  AP V+FLT  YHPN+D  G ICLDILKDKWS    +RT+LLSIQ+LL  PN D PL+ + A+ WK   A
Sbjct:   27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.951e-26
Identity = 57/128 (44.53%), Postives = 77/128 (60.16%), Query Frame = -2
Query:  278 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNE 661
            +R+  E   L+    PGISA P EDN+  +   I G   + +EG  ++L L    +YP  +PKV+F T  +HPN+D  G ICLDIL+DKWS A  +RT+LLSIQ+LL  PN   PL+   A+ W   E
Sbjct:   39 KRLQSELMGLMMGADPGISAFPEEDNIFCWKGTITGSKDTVFEGTEYRLSLTFSNDYPFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLWSNQE 166          
The following BLAST results are available for this feature:
BLAST of CN188510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2C_DROME2.619e-2645.74Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC2_NEUCR2.619e-2637.23Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_DEBHA2.619e-2636.50Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBE2S_DICDI4.467e-2636.77Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBE2S_RANCA9.951e-2640.00Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2C_MOUSE9.951e-2645.93Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA9.951e-2645.93Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_DICDI9.951e-2642.75Probable ubiquitin-conjugating enzyme E2 C OS=Dict... [more]
UBE2C_BOVIN9.951e-2645.93Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC19_ARATH9.951e-2644.53Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188510 ID=CN188510; Name=CN188510; organism=Citrus sinensis; type=EST; length=731bp
ATTAAACAATGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCC
ACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATG
TCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATT
TTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAG
TGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCA
TTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGG
CAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCT
TGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTC
TTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGAT
ATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATATTCTTCA
GGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGCGT
CGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAG
ATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGTTTCCTTG
ATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCGATTTTTT
TTGTTTTTTAACCTTCTGAAAACCCAAGGAA
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