CN188510

Overview
NameCN188510
Unique NameCN188510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2S_MOUSE (Ubiquitin-conjugating enzyme E2 S OS=Mus musculus GN=Ube2s PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  236 NLPRRII----KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 670
            NLP  II    KE   L ++P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P + PK  FLTKI+HPN+   G IC+++LK  W+  L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++
Sbjct:    7 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2S_HUMAN (Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens GN=UBE2S PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  236 NLPRRII----KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 670
            NLP  II    KE   L ++P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P + PK  FLTKI+HPN+   G IC+++LK  W+  L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++
Sbjct:    7 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 55/147 (37.41%), Postives = 84/147 (57.14%), Query Frame = -2
Query:  272 KKQKKSILEMANSNLPRRIIKETQRLLSEPAPGISASPSED-NMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 709
            K    + + +   ++ +R+  E   L+    PGISA P  D N+ ++   I GP+ + YEG  FK+ +  P  YP + P + F + ++HPN+D  G ICLDILKDKWS    ++T+LLS+Q+LL  PN   PL+   A+ W  +  E
Sbjct:   15 KNSSSAGMAVDGHSVTKRLRSELMSLMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIE 161          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.877e-24
Identity = 59/149 (39.60%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  236 NLPRRII----KETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLY 670
            NLP  II    KE   L ++P  GI   P+E+++    V I GP  +PY GG+F+++L L +++P + PK  FLTKI+HPN+   G IC+++LK  W+  L IR VLL+I+ LL  PNP+  L+E   +    N  E    A+  T ++
Sbjct:    7 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIH 155          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2S_DANRE (Ubiquitin-conjugating enzyme E2 S OS=Danio rerio GN=ube2s PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.451e-24
Identity = 59/152 (38.82%), Postives = 86/152 (56.58%), Query Frame = -2
Query:  227 NLP----RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASG 670
            NLP    R + KE   L ++P  GI   PSE+++   +  I GP  +PY GGVF++ L L +++P   P+  FLTKI+HPN+   G IC+++LK  W   L +R VLL+I+ LL  PNP+  L+E   K    +  E    A   T ++A G
Sbjct:    7 NLPPQVLRLVYKEVSALAADPPEGIKIYPSEEDITELHTSIEGPEGTPYAGGVFRMRLVLGKDFPAVPPRGYFLTKIFHPNVGHKGEICVNVLKRDWKAELGLRHVLLTIKCLLIHPNPESALNEEAGKLLLEDYKEYASRAHLLTEIHAMG 158          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC21_ARATH (Probable ubiquitin carrier protein E2 21 OS=Arabidopsis thaliana GN=UBC21 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.201e-24
Identity = 60/146 (41.10%), Postives = 91/146 (62.33%), Query Frame = -2
Query:  233 RIIKETQRLLSEPA--PGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNID-KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVET-AKEWTRLYA 658
            R+ KE + +  E    P I     + N+  +  +I GP+++PYEGGVF+L   +PE YP+  P+VRFLTKI+HPN+  K G ICLDILK+ WSPA  +++V  +I AL++ P PD PL+ +     ++ +     + A+ +TRL A
Sbjct:    7 RLFKEYKEVQREKVADPDIQLICDDTNIFKWTALIKGPSETPYEGGVFQLAFSVPEPYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGNLLRSGDVRGFNSMAQMYTRLAA 152          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2C_SPISO (Ubiquitin-conjugating enzyme E2 C OS=Spisula solidissima GN=UBE2C PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = -2
Query:  272 KQKKSILEMANS----NLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 706
            +QK+   +M  S    ++ +R+ +E + LL    PGI+A P  DN+  +   + GP  + YE   +KL L  P +YP   P V+F T  +HPN+D+ G ICLDILK+ W+ +  +RT+LLS+Q+LL  PN   PL+   A  W +N+ E
Sbjct:   14 RQKERPRDMTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTE 161          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.460e-24
Identity = 56/150 (37.33%), Postives = 86/150 (57.33%), Query Frame = -2
Query:  233 ANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK-WSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 679
            A+ +  RR+ KE   L   P P I  +  +DN+ ++    LGP+ S Y GG F   L  P +YP   P + F T+IYHPN D  G +CL ILK + + P++++R+VL  I  LL  PNPDDPL  +IA+ ++ +     + A+++   +A
Sbjct:    4 ASPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2S_BRAFL (Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma floridae GN=BRAFLDRAFT_259979 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.037e-23
Identity = 56/154 (36.36%), Postives = 86/154 (55.84%), Query Frame = -2
Query:  233 SILEMANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 694
            S +E  +  + R++ KE   L + P  G+   P+E ++      I GP  +PYEGG FK++L L +++P   PK  FLTKI+HPN+ K G IC++ LK  W   L ++ +LL+I+ LL  PNP+  L+E   K          E A+  T ++A
Sbjct:    5 SNVENLSPQIIRQVAKEVLDLANHPPEGVKVFPNEQDITDVQATIEGPGGTPYEGGQFKIKLSLGKDFPQTPPKGFFLTKIFHPNVAKNGEICVNTLKKDWKADLGLKHILLTIKCLLIYPNPESALNEEAGKLLLEQYDNYSERARMMTEIHA 158          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.884e-23
Identity = 53/146 (36.30%), Postives = 84/146 (57.53%), Query Frame = -2
Query:  224 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYASGA 661
            R+++KE Q + S P  GI    +E ++     +I GP  +PY  G+F+++L L +++P   PK  FLTKI+HPN+   G IC++ LK  W P L I+ +LL+I+ LL  PNP+  L+E   K       +  + A+  T ++A  A
Sbjct:   17 RQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHAQPA 162          
The following BLAST results are available for this feature:
BLAST of CN188510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2S_MOUSE1.877e-2439.60Ubiquitin-conjugating enzyme E2 S OS=Mus musculus ... [more]
UBE2S_HUMAN1.877e-2439.60Ubiquitin-conjugating enzyme E2 S OS=Homo sapiens ... [more]
UBC11_SCHPO1.877e-2437.41Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UB2SA_XENLA1.877e-2439.60Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2S_DANRE2.451e-2438.82Ubiquitin-conjugating enzyme E2 S OS=Danio rerio G... [more]
UBC21_ARATH3.201e-2441.10Probable ubiquitin carrier protein E2 21 OS=Arabid... [more]
UBE2C_SPISO5.460e-2438.93Ubiquitin-conjugating enzyme E2 C OS=Spisula solid... [more]
UBC14_SCHPO5.460e-2437.33Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2S_BRAFL6.037e-2336.36Ubiquitin-conjugating enzyme E2 S OS=Branchiostoma... [more]
UBE2S_DROGR7.884e-2336.30Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188510 ID=CN188510; Name=CN188510; organism=Citrus sinensis; type=EST; length=731bp
ATTAAACAATGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCC
ACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATG
TCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATT
TTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAG
TGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCA
TTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGG
CAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCT
TGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTC
TTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGAT
ATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATATTCTTCA
GGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGCGT
CGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAG
ATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGTTTCCTTG
ATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCGATTTTTT
TTGTTTTTTAACCTTCTGAAAACCCAAGGAA
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