CN188510

Overview
NameCN188510
Unique NameCN188510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4591 contig Csv1_Contig4591:87..818. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.613e-34
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+  G ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:    4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.297e-33
Identity = 71/143 (49.65%), Postives = 91/143 (63.64%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D++ ++   I+GP  SPY+GGVF L +  P +YP   PKV F TKIYHPNI+  G ICLDIL+ +WSPAL +  VLLSI +LL  PNPDDPL   IA  +K +  +    A+EWT+ YA
Sbjct:    4 KRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYA 146          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.693e-33
Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = -2
Query:  233 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 661
            +RI KE   L  +P    SA P  D+M ++   I+GP  SPY+GGVF L +  P +YP   PKV F T+IYHPNI+    ICLDIL+ +WSPAL I  VLLSI +LL  PNPDDPL   IA+ +KT+  +    ++EWT+ YA
Sbjct:    4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYA 146          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.212e-33
Identity = 79/164 (48.17%), Postives = 99/164 (60.37%), Query Frame = -2
Query:  230 KKQKKSILEMANSNL----PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 709
            KK++  +    NS L     +RI KE   +  +P P  SA P  DN+  +   ILGP  S YEGGVF L++    EYP   PKV F T+IYH NI+  G ICLDILKD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:   30 KKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 193          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.212e-33
Identity = 79/164 (48.17%), Postives = 99/164 (60.37%), Query Frame = -2
Query:  230 KKQKKSILEMANSNL----PRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 709
            KK++  +    NS L     +RI KE   +  +P P  SA P  DN+  +   ILGP  S YEGGVF L++    EYP   PKV F T+IYH NI+  G ICLDILKD WSPAL I  VLLSI +LL+  NP DPL  +IA  + TN AE    A++WT+ YA+
Sbjct:   30 KKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT 193          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.888e-33
Identity = 69/146 (47.26%), Postives = 91/146 (62.33%), Query Frame = -2
Query:  233 RIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDIL----KDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYA 658
            R+ +E   L +EP PGI+     D M      ILG   +PYE GVFKLE+ +PE YP   P++RFLT IYHPNID  GRICLD+L    K  W P+L I T+L  IQ L++ PNPDDPL  +I+  +K N+    + A++WT  +A
Sbjct:    6 RLKRELSLLAAEPPPGITCWQDGDRMEDLRAQILGGANTPYEKGVFKLEVHIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
The following BLAST results are available for this feature:
BLAST of CN188510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UB2D3_PONAB2.613e-3450.35Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE2.613e-3450.35Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA2.613e-3450.35Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN2.613e-3450.35Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG2.613e-3450.35Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UB2D4_HUMAN1.297e-3349.65Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UB2D3_BOVIN1.693e-3349.65Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
UB2E1_MOUSE2.212e-3348.17Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN2.212e-3348.17Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBE2T_BOVIN2.888e-3347.26Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188510 ID=CN188510; Name=CN188510; organism=Citrus sinensis; type=EST; length=731bp
ATTAAACAATGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCC
ACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATG
TCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATT
TTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAG
TGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCA
TTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGG
CAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCT
TGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTC
TTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGAT
ATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATATTCTTCA
GGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGCGT
CGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAG
ATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGTTTCCTTG
ATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCGATTTTTT
TTGTTTTTTAACCTTCTGAAAACCCAAGGAA
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