CN188510

Overview
NameCN188510
Unique NameCN188510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length731
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.640e-28
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            RR++++ +RL S+P  GIS +P E+N+  +  +I GP  S +EG  FKL L   EEYP  AP V+FL+K++HPN+   G ICLDIL+++WSP   I  +L SIQ+LL  PNP+ P +   A+ ++ N+ E     KE
Sbjct:    7 RRLMRDFKRLQSDPPAGISGAPLENNILMWQAVIFGPDDSIWEGATFKLSLQFSEEYPNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKE 143          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.654e-28
Identity = 54/130 (41.54%), Postives = 87/130 (66.92%), Query Frame = -2
Query:  272 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 661
            RR++++ ++L  +P  G+S +P+EDN+  +  +I GP ++P+E G FKL L   EEYP   P V+F++K++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ ++ N  E
Sbjct:    7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRRE 136          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 4.772e-28
Identity = 56/130 (43.08%), Postives = 87/130 (66.92%), Query Frame = -2
Query:  272 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAE 661
            +R++ + +RL  +P  GIS +P ++N+ ++N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  VL SIQ+LL  PNPD P +   A+ +  N+ E
Sbjct:    7 KRLMWDFKRLQKDPPVGISGAPQDNNIMHWNALIFGPEDTPWDGGTFKLTLHFTEDYPNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKRE 136          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 55/137 (40.15%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E     +E
Sbjct:    7 KRLMRDFKRLQQDPPAGISGAPHDNNITLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVRE 143          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 55/137 (40.15%), Postives = 89/137 (64.96%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            +R++++ +RL  +P  GIS +P ++N+  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E     +E
Sbjct:    7 KRLMRDFKRLQHDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 143          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.233e-28
Identity = 58/141 (41.13%), Postives = 90/141 (63.83%), Query Frame = -2
Query:  239 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRL 661
            RR+I++ +RL S+   GIS SP+ DN+  +N +I GP ++P+E G F+L L   + YP   P VRF++K++HPNI   G +CLDIL+++WSP   +  +L S+Q+LL+ PNP  P + + A+ +K N  E     K+   L
Sbjct:    7 RRLIRDFKRLTSDAPIGISGSPNPDNIMVWNAVIFGPPETPFEDGSFRLTLTFTDAYPNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVEL 147          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 52/137 (37.96%), Postives = 91/137 (66.42%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P+V+F+++++HPN+   G +CLDIL+++WSP   +  VL SIQ+LL+ PN   P +   +  +K N  E ++  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPIPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRE 143          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.063e-27
Identity = 51/137 (37.23%), Postives = 90/137 (65.69%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P V+F+++++HPN+   G +CLDIL+++WSP   +  +L SIQ+LL+ PN   P +   +  +K N  E ++  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVADNVMTWNAVIIGPADTPFEDGTFRLVMHFEEQYPNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRE 143          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 62/144 (43.06%), Postives = 90/144 (62.50%), Query Frame = -2
Query:  230 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKEWTRLYAS 661
            +RI  E + ++S+ +   S   + +N+  +  +I GP  +PYEGG+F L +  P +YP   PK  F T IYHPNI+  G IC++ILKDKW+PAL +  VLLSI  LL  PNPDDPL   I + +K N  +  + A+E+T  +A+
Sbjct:   11 QRIAMEYRAMISKESL-FSIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHAN 153          
BLAST of CN188510 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.389e-27
Identity = 52/137 (37.96%), Postives = 90/137 (65.69%), Query Frame = -2
Query:  251 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKTNEAEAVETAKE 661
            RR++++ +R+ ++P  G+SASP  DN+  +N +I+GP  +P+E G F+L +   E+YP   P+V+F+++++HPN+   G +CLDIL+++WSP   +  VL SIQ+LL+ PN   P +   +  +K N  E  +  +E
Sbjct:    7 RRLMRDFKRMQTDPPAGVSASPVPDNVMTWNAVIIGPADTPFEDGTFRLVMQFEEQYPNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRE 143          
The following BLAST results are available for this feature:
BLAST of CN188510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBC2_DICDI1.640e-2844.53Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC1_CAEEL3.654e-2841.54Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC3_ARATH4.772e-2843.08Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_WHEAT6.233e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBC2_MEDSA6.233e-2840.15Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_CRYNE6.233e-2841.13Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC2_TRIHA1.063e-2737.96Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]
UBC2_ASPFU1.063e-2737.23Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC31_ARATH1.389e-2743.06Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC2_NECHA1.389e-2737.96Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188510 ID=CN188510; Name=CN188510; organism=Citrus sinensis; type=EST; length=731bp
ATTAAACAATGTATATCATCTAATCATACAAGTTCAAAGACATGGCTTCC
ACAAGAAGAAAATAATTGACATGTGCGGTAAGATGGAAGCTTTCAGAATG
TCAAACTCCGAATGTTCAAACATCAATTCAATTCTTCCAAATTTTCCATT
TTAAACAGACAGTGAATAGCATACATTGCACAATTGTTATTTGAATGAAG
TGATATTTTCCACCATGTCATCAAGCACCACTGGCATATAAACGTGTCCA
TTCCTTCGCTGTTTCAACTGCTTCGGCCTCATTTGTTTTCCAGTGTTTGG
CAATGTTCTCGGAGAGAGGATCATCGGGGTTAGGAGCACTCAGAAGTGCT
TGAATGCTCAACAGTACAGTCCGAATCTGGAGAGCTGGACTCCACTTGTC
TTTCAGAATATCAAGACAAATCCTTCCAAGCTTATCAATGTTAGGATGAT
ATATCTTGGTAAGAAATCGGACCTTTGGAGCAGCCATTGGATATTCTTCA
GGCAAAAATAATTCCAATTTGAACACCCCTCCTTCATATGGAGATTGCGT
CGGACCAAGGATCATCACATTAAAGTATCGCATATTATCTTCCGAGGGAG
ATGCACTTATTCCTGGTGCTGGTTCACTGAGGAGACGCTGTGTTTCCTTG
ATGATACGTCGAGGGAGATTACTGTTCGCCATTTCCAAGATCGATTTTTT
TTGTTTTTTAACCTTCTGAAAACCCAAGGAA
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