CX675784
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44 Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + C K W PI KKFE LSYLP LSD +AKE+DY+L+ WIP +EF+ E G+V+RE+ PGY+DGRYWTMWKLP+FGC DS+Q+L E+QECKK YPNA R + F+N +Q QC+SF KP Sbjct: 48 SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKP 175
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44 Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + +C + W P+ KKFE LSYLP LS +S+AKE+DY+L+K W+P LEF+ E G+V+REN + PGY+DGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++ R + F+N +Q QC+SF KP Sbjct: 53 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44 Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = -2 Query: 363 KTVSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFDEVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 752 KT SNGS+ RC + W P NKKFE LSYLP L+ + + KE++Y+LK W+P LEF+E G + R PGY+DGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+ R + F+N +Q QC+SF + KP Sbjct: 57 KTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44 Identity = 74/128 (57.81%), Postives = 101/128 (78.91%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + +C + W PIN KK+E LSYLP LS++ + +E++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 51 SNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.264e-44 Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + C + W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 50 SNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1) HSP 1 Score: 179.104 bits (453), Expect = 2.264e-44 Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + C + W PIN KK+E LSYLP LSD+ + EI+Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF KP Sbjct: 50 SNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.958e-44 Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = -2 Query: 363 VSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFDEVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 746 VSNG + RC + W NKKFE LSYLP LS D + K++DY+L+ GWIP LEF +VG+V+RENS P Y+DGRYWTMWKLPMFGCND++Q+ E+QE K+YP+A+ R + F+N KQ QC+SF KP Sbjct: 39 VSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.958e-44 Identity = 76/132 (57.58%), Postives = 101/132 (76.52%), Query Frame = -2 Query: 363 SKTVSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 755 S SNG + +C K W PI KK+E LSYLP LSD++++KEIDY+++ WIP LEF+ E G+V+RE+ PGY+DGRYWTMWKLPMFGC DS+Q++ E+ ECKK YPNA+ R + F+N +Q QC+SF + KP Sbjct: 46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 178.718 bits (452), Expect = 2.958e-44 Identity = 73/128 (57.03%), Postives = 100/128 (78.12%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + +C K W P+ KK+E LSYLP+L++ +AKE+DY+L+ W+P LEF+ E G+V+REN++ PGY+DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+ R + F+N +Q QC+SF KP Sbjct: 48 SNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 3.863e-44 Identity = 72/128 (56.25%), Postives = 100/128 (78.12%), Query Frame = -2 Query: 363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743 SNG + +C K W P+ K++E LSYLP+L++ +AKE+DY+L+ W+P LEF+ E G+V+REN++ PGY+DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+ R + F+N +Q QC+SF KP Sbjct: 43 SNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170 The following BLAST results are available for this feature:
BLAST of CX675784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 148
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Sequences
The
following sequences are available for this feature:
EST sequence >CX675784 ID=CX675784; Name=CX675784; organism=Citrus sinensis; type=EST; length=756bpback to top |