CX675784

Overview
NameCX675784
Unique NameCX675784
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44
Identity = 77/128 (60.16%), Postives = 96/128 (75.00%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG +  C K W PI  KKFE LSYLP LSD  +AKE+DY+L+  WIP +EF+ E G+V+RE+   PGY+DGRYWTMWKLP+FGC DS+Q+L E+QECKK YPNA  R + F+N +Q QC+SF   KP
Sbjct:   48 SNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKP 175          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44
Identity = 76/128 (59.38%), Postives = 100/128 (78.12%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + +C + W P+  KKFE LSYLP LS +S+AKE+DY+L+K W+P LEF+ E G+V+REN + PGY+DGRYWTMWKLPMFGC DSSQ+L E++E KKAYP ++ R + F+N +Q QC+SF   KP
Sbjct:   53 SNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44
Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = -2
Query:  363 KTVSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFDEVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 752
            KT SNGS+ RC + W P  NKKFE LSYLP L+ + + KE++Y+LK  W+P LEF+E G + R     PGY+DGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+ R + F+N +Q QC+SF + KP
Sbjct:   57 KTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.734e-44
Identity = 74/128 (57.81%), Postives = 101/128 (78.91%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + +C + W PIN KK+E LSYLP LS++ + +E++Y+LK GW+P LEF+ E G+V+REN+K PGY+DGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   51 SNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3B_SOLLC (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Solanum lycopersicum GN=RBCS-3B PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.264e-44
Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG +  C + W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   50 SNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3A_SOLLC (Ribulose bisphosphate carboxylase small chain 3A/3C, chloroplastic OS=Solanum lycopersicum GN=RBCS-3A/3C PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.264e-44
Identity = 77/128 (60.16%), Postives = 98/128 (76.56%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG +  C + W PIN KK+E LSYLP LSD+ +  EI+Y+LK GW+P LEF+ E G+V+REN K PGY+DGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+ R + F+N +Q QC+SF   KP
Sbjct:   50 SNGGRVSCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.958e-44
Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = -2
Query:  363 VSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFDEVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 746
            VSNG + RC + W    NKKFE LSYLP LS D + K++DY+L+ GWIP LEF +VG+V+RENS  P Y+DGRYWTMWKLPMFGCND++Q+  E+QE  K+YP+A+ R + F+N KQ QC+SF   KP
Sbjct:   39 VSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKP 166          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.958e-44
Identity = 76/132 (57.58%), Postives = 101/132 (76.52%), Query Frame = -2
Query:  363 SKTVSNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 755
            S   SNG + +C K W PI  KK+E LSYLP LSD++++KEIDY+++  WIP LEF+ E G+V+RE+   PGY+DGRYWTMWKLPMFGC DS+Q++ E+ ECKK YPNA+ R + F+N +Q QC+SF + KP
Sbjct:   46 SSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.958e-44
Identity = 73/128 (57.03%), Postives = 100/128 (78.12%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + +C K W P+  KK+E LSYLP+L++  +AKE+DY+L+  W+P LEF+ E G+V+REN++ PGY+DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+ R + F+N +Q QC+SF   KP
Sbjct:   48 SNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175          
BLAST of CX675784 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.863e-44
Identity = 72/128 (56.25%), Postives = 100/128 (78.12%), Query Frame = -2
Query:  363 SNGSKTRCRKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPSLEFD-EVGYVHRENSKMPGYFDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYFRCLAFNNQKQGQCMSFFIQKP 743
            SNG + +C K W P+  K++E LSYLP+L++  +AKE+DY+L+  W+P LEF+ E G+V+REN++ PGY+DGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+ R + F+N +Q QC+SF   KP
Sbjct:   43 SNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
The following BLAST results are available for this feature:
BLAST of CX675784 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBS_RAPSA1.734e-4460.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.734e-4459.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.734e-4456.92Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_NICSY1.734e-4457.81Ribulose bisphosphate carboxylase small chain S41,... [more]
RBS3B_SOLLC2.264e-4460.16Ribulose bisphosphate carboxylase small chain 3B, ... [more]
RBS3A_SOLLC2.264e-4460.16Ribulose bisphosphate carboxylase small chain 3A/3... [more]
RBS_MAIZE2.958e-4459.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA2.958e-4457.58Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_FLAPR2.958e-4457.03Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_FLAPR3.863e-4456.25Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64G12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64G12-M24-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675784 ID=CX675784; Name=CX675784; organism=Citrus sinensis; type=EST; length=756bp
TTTTTTTTTTTTTTTTTAGTAAAATACTAGGAATGCATTGGAGCTGATAG
CACAACCATACAAGAAAAAACAATAACTTAAAAAGTAAAGTGAATGCCAG
TGAAAGCCAGCATAGGATGCAATGATGCATATAGAGAGTCAAAACTGCTA
CAAGAAAAGTTATAATAAAACGTCTGGTGTTTCCAACCAGCTGCGCCGAA
AGAAGAACCTTTAAACTGTGTGCTAATCACATGATGTCACACAAATTATG
ATCAAGTCTTTATTATTTAAAACGAAAAGCATCTCCCTAATCAAACAAGC
TGCATTATAGAATTCAACCAAACAAAGTGAGAGAAGTGCTTTTAGGTGCT
AGTGGTGGTGGTTGGTTTCTGGATGAAAAAGGACATGCACTGACCCTGTT
TCTGATTGTTAAATGCCAAGCAGCGAAAATAAGCATTTGGGTATGCTTTT
TTGCACTCTTGTATTTCATTCAGGATTTGAGATGAATCATTGCATCCAAA
CATTGGCAACTTCCACATTGTCCAATACCTCCCATCAAAATACCCTGGCA
TTTTGCTATTCTCCCTGTGCACATATCCCACCTCATCAAATTCAAGGGAA
GGGATCCATCCCTTTTTGAGCATGTAGTCAATCTCCTTTGCAATTGAATC
ATCCGAGAGCGATGGCAGGTAGGAGAGGGCCTCAAACTTTTTGTTATTGA
TTGGATTCCATGTCTTCCTGCATCGAGTTTTTGAACCGTTTGAGACTGTT
TTGCTG
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