CN188501

Overview
NameCN188501
Unique NameCN188501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: FIGN_DANRE (Fidgetin OS=Danio rerio GN=fign PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.478e-14
Identity = 52/170 (30.59%), Postives = 94/170 (55.29%), Query Frame = 3
Query:    9 GAC-AAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF--SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARIL-QIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            G C A+Q  A F  ++G  LV  ++G+G K+V+ +F +A+ + P ++FI ++D +      S++S +  V R   ELL QLDG   S ++ + V+ +T++ + +D +L R     +++ +P P   AR +I+ Q+ S+      D     L + TD F+G  +  +C EA
Sbjct:  514 GRCMASQLGAAFLLLSGSALVTKWLGEGEKIVQASFLIARCRQPSVVFISDVDLL----LSSQLSEESPVNRIKSELLLQLDGVLSSPEEHVLVVCSTSKPEEIDESLRR--YFVKRLLVPLPDATARHQIISQLLSQHNYCLSDKEVTLLVQRTDGFSGLDVVRLCQEA 677          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: YKX4_SCHPO (Uncharacterized AAA domain-containing protein C328.04 OS=Schizosaccharomyces pombe GN=SPAC328.04 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.673e-13
Identity = 56/184 (30.43%), Postives = 91/184 (49.46%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGF---------SSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARA----RILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A A ++ + FF I+   L   F+G+  KLVR  F LAK+ SP IIF+DEID++ + R  S+ +     +R   E L Q             +   R+ V+AATN    +D A  R  R  R+  +P P E  R      +L+     +++    + E + ++T+ ++G+ L A+  +A M  LR
Sbjct:  511 AVATESRSVFFSISASSLTSKFLGESEKLVRALFTLAKKLSPSIIFVDEIDSLLSAR-SSDGNEHETSRRIKTEFLIQWSSLARAAASRQTADHPRVLVLAATNLPWCIDDAARR--RFVRRTYIPLPDETTRRLHLNNLLKYQKHSLSLE---DIEAIVKATEYYSGSDLTALAKDAAMGPLR 688          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: ATD1A_DANRE (ATPase family AAA domain-containing protein 1-A OS=Danio rerio GN=atad1a PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 6.103e-13
Identity = 46/171 (26.90%), Postives = 82/171 (47.95%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALR 524
            A A  +   F  +    L   + G+  KL    F LA +  PCIIF+DEID+    R   +      ++   + L + LD    + ++ V+ ATNR   +D A++R  R+     +  P+   R  IL++      +   +N +E+A  ++ ++G+ LK +C +A M  +R
Sbjct:  148 ATAKASGCRFINLQASTLTDKWYGESQKLTAAVFSLAVKIQPCIIFLDEIDSFLRNRSSMDHEATAMMKAQFMSLWDGLD-TGENSQVMVMGATNRPQDVDAAILR--RMPTAFHVGLPNAAQREEILRLILSGENLSNAINLKEIASQSEGYSGSDLKELCRDAAMYRVR 315          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: YCF2_MESVI (Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 54/195 (27.69%), Postives = 90/195 (46.15%), Query Frame = 3
Query:   99 VRDAFQLAKEKSPCIIFIDEIDAIGTKRFD-----------------SEVSGDREVQRTML-ELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRK-MTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATE------VNHEDFNEGIIQVQAKKKASLNY 608
            V D F+  +  SPCI++IDEID+I  +R +                 S ++ D++   T+L + L  +DG+   + + +I ATNR + LD A+MR GR DR+I    P  E R  IL+I  R    +  D     +A  +   NG  L+ +     +L+      +      +N + F+  + +V   +    NY
Sbjct:  426 VDDLFKQIQNISPCILYIDEIDSIAERREEANKQLEQLKTIGDSIEGSNINIDQKPSDTVLMQFLIYMDGYKKRNDLIIIGATNRIETLDDAIMRPGRFDRQIVFSPPFFEERKDILRIFLRNTKALVDDTTKTMMAERSIGLNGCDLRLLADNILLLSALESRNQQKTIPVINEDTFDRALERVSRIRHIISNY 620          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: YCF46_GRATL (Uncharacterized AAA domain-containing protein ycf46 OS=Gracilaria tenuistipitata var. liui GN=ycf46 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 52/168 (30.95%), Postives = 81/168 (48.21%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSG-DREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKM--TVHPDVNFEELARSTDDFNGAQLKAVCVEA 506
            A + Q N    K+    +    +G   + +R   + A++ SPCI++IDEID   T+  +   SG +  V  TML  L++         + VIA  N+   L   L+R GR D    L  PS E R +I QIH  K         + + L++ TD F+GA+++   +EA
Sbjct:  279 AISGQWNLPLLKLDMGKIFASLVGQSEERMRHMIKTAEQSSPCILWIDEIDKCFTRLNNYTDSGTNGRVLSTMLTWLSE-----KKKPVFVIATANQVLSLPSELLRKGRFDEIFFLNLPSLEEREKIFQIHLMKFRPLSWRKYDIKYLSKLTDQFSGAEIEQAIIEA 441          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: FTSH_OLTVI (Cell division protease ftsH homolog OS=Oltmannsiellopsis viridis GN=ftsH PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 37/117 (31.62%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  192 EVSGDREVQRTMLE----LLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRD 530
            E S + EV++  L     LL ++DG +  + + V  ATNR ++LDPAL+R GR D+ + +  P ++ R  IL+++++K+     +++E  A  T   + A L A+  ++ +LA+  D
Sbjct: 1489 ESSNEMEVEKNQLSALIRLLVEMDGLNPLNGVIVFGATNRPEVLDPALIRPGRFDQILPIELPGKQKRVEILKLYAKKLGTAKSISWEYFANRTVGLSAADLAAIMNQSTILAVFND 1605          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: Y4KL_RHISN (Uncharacterized AAA family ATPase y4kL OS=Rhizobium sp. (strain NGR234) GN=NGR_a02840 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 53/193 (27.46%), Postives = 91/193 (47.15%), Query Frame = 3
Query:   18 AAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKA 596
            AA+     F++    L+  ++G+ A  +R  F+ A+ K PC++F DE DA+   R DS      E++R +  LL  +D       +  IAATN    LD A+ R  R D  +    P      R L++  + + V  D      A   + ++ A+++ VC +A    +     +V   DFN   +Q +A+++A
Sbjct:  139 AAELGLPLFRVKLDRLISSYLGETATNIRKTFEFAR-KQPCVLFFDEFDALARTRDDS--GEHNELRRVVNSLLLFIDNMQPKGFL--IAATNLDRSLDAAIWR--RFDEVLWFDRPEAAMIGRFLKLKFKNVPVAFDPARNSAA--LEGYSFAEIERVCTQAIKAMIIERRKQVQERDFNRA-LQDEARRRA 321          
The following BLAST results are available for this feature:
BLAST of CN188501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
FIGN_DANRE2.478e-1430.59Fidgetin OS=Danio rerio GN=fign PE=2 SV=1[more]
YKX4_SCHPO4.673e-1330.43Uncharacterized AAA domain-containing protein C328... [more]
ATD1A_DANRE6.103e-1326.90ATPase family AAA domain-containing protein 1-A OS... [more]
YCF2_MESVI6.748e-1227.69Protein ycf2 OS=Mesostigma viride GN=ycf2 PE=3 SV=... [more]
YCF46_GRATL1.963e-1130.95Uncharacterized AAA domain-containing protein ycf4... [more]
FTSH_OLTVI2.564e-1131.62Cell division protease ftsH homolog OS=Oltmannsiel... [more]
Y4KL_RHISN7.461e-1127.46Uncharacterized AAA family ATPase y4kL OS=Rhizobiu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188501 ID=CN188501; Name=CN188501; organism=Citrus sinensis; type=EST; length=661bp
CCGTAAGAGGTGCTTGTGCAGCACAAACAAATGCTACCTTCTTTAAAATC
GCAGGCCCTCTTCTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAAT
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