CN188501

Overview
NameCN188501
Unique NameCN188501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.994e-52
Identity = 108/198 (54.55%), Postives = 137/198 (69.19%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLN 605
            A A  T   F +++G  LVQ +IG+G++LVR+ F +A+E +P IIF+DEID+IG+ R DS    D EVQRTMLELLNQLDGF S + IKVI ATNR DILDPAL+R+GR+DRKIE P P+E AR  IL+IHSRKM +   ++ E +A      +GA++KAVC EAGM ALR     V  EDF   + +V  KK   LN
Sbjct:  249 AVAHHTQCKFIRVSGSELVQKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGSDSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALRERRVHVTQEDFEMAVHKV-LKKTGDLN 445          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PS10A_ARATH (26S protease regulatory subunit 10B homolog A OS=Arabidopsis thaliana GN=RPT4A PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.911e-52
Identity = 96/201 (47.76%), Postives = 143/201 (71.14%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV-QAKKKASLNYY 611
            A A+  +A F K+    ++  +IG+ A+L+R+ F  A+E  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF +  ++K+I ATNR D+LDPAL+R GRLDRKIE+P P+E++R  IL+IH+  +  H ++++E + +  + FNGA L+ +C EAGM A+R +   V HEDF + + ++ +AKK  S ++Y
Sbjct:  192 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDNLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMDILKIHAAGIAKHGEIDYEAIVKLAEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHY 392          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PS10B_ARATH (26S protease regulatory subunit S10B homolog B OS=Arabidopsis thaliana GN=RPT4B PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.107e-52
Identity = 96/201 (47.76%), Postives = 142/201 (70.65%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV-QAKKKASLNYY 611
            A A+  +A F K+    ++  +IG+ A+L+R+ F  A+E  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF    ++K+I ATNR D+LDPAL+R GRLDRKIE+P P+E++R  IL+IH+  +  H ++++E + +  + FNGA L+ +C EAGM A+R +   V HEDF + + ++ +AKK  S ++Y
Sbjct:  192 AIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHASGIAKHGEIDYEAIVKLGEGFNGADLRNICTEAGMFAIRAERDYVIHEDFMKAVRKLSEAKKLESSSHY 392          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_RAT (26S protease regulatory subunit 8 OS=Rattus norvegicus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.107e-52
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ FIG+GA++VR+ F +A+E +P IIF+DEID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  202 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_PIG (26S protease regulatory subunit 8 OS=Sus scrofa GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.107e-52
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ FIG+GA++VR+ F +A+E +P IIF+DEID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  202 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_MOUSE (26S protease regulatory subunit 8 OS=Mus musculus GN=Psmc5 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.107e-52
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ FIG+GA++VR+ F +A+E +P IIF+DEID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  202 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_HUMAN (26S protease regulatory subunit 8 OS=Homo sapiens GN=PSMC5 PE=1 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.107e-52
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ FIG+GA++VR+ F +A+E +P IIF+DEID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  202 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_BOVIN (26S protease regulatory subunit 8 OS=Bos taurus GN=PSMC5 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.107e-52
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ FIG+GA++VR+ F +A+E +P IIF+DEID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  202 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 393          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.712e-52
Identity = 96/189 (50.79%), Postives = 139/189 (73.54%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            A A +TNATF ++ G  LVQ +IGDG+KLVR+ F++A++K+P IIFIDE+D+I  +R +     DREVQRT+++LL ++DGF     I++IAATNR D+LDPA++R GR DR + +P P  EAR +IL+IH  KMT+  D++F++LA++T+  +GA LKA+  EAGM A+RRD   V  E+F E + +V
Sbjct:  212 AVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCEKMTLAEDIDFKKLAKATEGMSGADLKAIATEAGMFAVRRDKELVEMEEFLEAVEKV 400          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8B_ARATH (26S protease regulatory subunit 8 homolog B OS=Arabidopsis thaliana GN=RPT6B PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.138e-51
Identity = 102/193 (52.85%), Postives = 141/193 (73.06%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ +IG+G+++VR+ F +A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF + ++IKV+ ATNR DILD AL+R GR+DRKIE P+P+EE+R  IL+IHSRKM +   ++ +++A   +  +GA+LKAVC EAGM ALR     V  EDF   + +V  K
Sbjct:  214 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKK 406          
The following BLAST results are available for this feature:
BLAST of CN188501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS8_ENCCU2.994e-5254.5526S protease regulatory subunit 8 homolog OS=Encep... [more]
PS10A_ARATH3.911e-5247.7626S protease regulatory subunit 10B homolog A OS=A... [more]
PS10B_ARATH5.107e-5247.7626S protease regulatory subunit S10B homolog B OS=... [more]
PRS8_RAT5.107e-5254.1726S protease regulatory subunit 8 OS=Rattus norveg... [more]
PRS8_PIG5.107e-5254.1726S protease regulatory subunit 8 OS=Sus scrofa GN... [more]
PRS8_MOUSE5.107e-5254.1726S protease regulatory subunit 8 OS=Mus musculus ... [more]
PRS8_HUMAN5.107e-5254.1726S protease regulatory subunit 8 OS=Homo sapiens ... [more]
PRS8_BOVIN5.107e-5254.1726S protease regulatory subunit 8 OS=Bos taurus GN... [more]
PSMR_METMA8.712e-5250.79Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS8B_ARATH1.138e-5152.8526S protease regulatory subunit 8 homolog B OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188501 ID=CN188501; Name=CN188501; organism=Citrus sinensis; type=EST; length=661bp
CCGTAAGAGGTGCTTGTGCAGCACAAACAAATGCTACCTTCTTTAAAATC
GCAGGCCCTCTTCTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAAT
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