CN188501

Overview
NameCN188501
Unique NameCN188501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8A_ARATH (26S protease regulatory subunit 8 homolog A OS=Arabidopsis thaliana GN=RPT6A PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.138e-51
Identity = 102/193 (52.85%), Postives = 141/193 (73.06%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ +IG+G+++VR+ F +A+E +P IIF+DEID+IG+ R +S   +GD EVQRTMLELLNQLDGF + ++IKV+ ATNR DILD AL+R GR+DRKIE P+P+EE+R  IL+IHSRKM +   ++ +++A   +  +GA+LKAVC EAGM ALR     V  EDF   + +V  K
Sbjct:  214 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKK 406          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS10_DICDI (26S protease regulatory subunit S10B OS=Dictyostelium discoideum GN=psmC6 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.941e-51
Identity = 94/194 (48.45%), Postives = 134/194 (69.07%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A+   A F K+    +V  +IG+ A+++R+ F  A++  PC+IF+DEIDAIG +RF    S DRE+QRT++ELLNQ+DGF +  ++K+I ATNR D+LDPAL+R GRLDRKIE+P P+E  R  +L+IH+  +T H DV++E +A+  D FN A L+ VC EAGM A+R +   V  EDF + + + Q  KK
Sbjct:  190 AIASNLEANFLKVVSSAIVDKYIGESARVIREMFGYARDHQPCVIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLSKVKIIMATNRPDVLDPALLRPGRLDRKIEIPLPNEAGRVDVLKIHAANITKHGDVDYEAIAKLADGFNAADLRNVCTEAGMFAIRAERDYVMEEDFMKAVRKCQEAKK 383          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 2.535e-51
Identity = 96/189 (50.79%), Postives = 138/189 (73.02%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            A A +TNATF ++ G  LVQ +IGDG+KLVR+ F++A++K+P IIFIDE+D+I  +R +     DREVQRT+++LL ++DGF     I++IAATNR D+LDPA++R GR DR + +P P  EAR +IL+IH  KMT+  D++F++LA+ T+  +GA LKA+  EAGM A+R+D   V  EDF E + +V
Sbjct:  212 AVAHRTNATFIRVVGSELVQKYIGDGSKLVREIFEMARKKAPSIIFIDELDSIAARRLNETTGADREVQRTLMQLLAEMDGFDKRKNIRIIAATNRPDVLDPAILRPGRFDRLVHVPMPGIEARGKILKIHCGKMTLAGDIDFKKLAKVTEGMSGADLKAIATEAGMFAVRKDKALVEMEDFLEAVEKV 400          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 201.83 bits (512), Expect = 2.535e-51
Identity = 101/193 (52.33%), Postives = 133/193 (68.91%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 590
            A A QT+ATF +I G  L+Q ++GDG +L R  F++A E +P I+FIDEIDAIGTKR+DS   G+RE+QRTMLELLNQLDGF     +KVI ATN+ + LDPAL+R GR+DRKI   +P    + +IL IH+ KM +  DVN E L  + DD +GA ++A+C EAG+LALR    +V  EDF +   +V   K
Sbjct:  235 AVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.310e-51
Identity = 105/193 (54.40%), Postives = 135/193 (69.95%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEV-SGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+  F +++G  LVQ +IG+G+++VR+ F +A+E +P IIF+DEID+IG+ R DS   SGD EVQRTMLELLNQLDGF +   IKVI ATNR DILDPAL+R GR+DRKIE P PS EARA IL+IHSR M +   ++ + +A   +  +GA+LK VC EAGM ALR     V  EDF   + +V  K
Sbjct:  198 AVAHHTDCKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNK 390          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_METB6 (Proteasome-activating nucleotidase OS=Methanoregula boonei (strain 6A8) GN=pan PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.324e-51
Identity = 99/190 (52.11%), Postives = 135/190 (71.05%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQ 581
            A A +TNA F ++ G  LVQ +IG+GA+LVR+ F LAK+K+P IIFIDEIDA+G  R ++  SGDREVQRT+++LL  +DGF +   +K+I ATNR DILD AL+R GR DR IE+P P EE R  IL++H+R +T+   VN  E+A  T+  NGA L+A+C+EAGM A+R +   +  EDF   I +V+
Sbjct:  231 AVAHETNAHFMRVVGSELVQKYIGEGARLVRELFDLAKKKAPTIIFIDEIDAVGASRTEANTSGDREVQRTLMQLLAGMDGFETRGDVKIIGATNRIDILDKALLRPGRFDRIIEIPLPDEEGRLSILKVHTRTLTMEETVNLPEIAGLTEGKNGADLRAICMEAGMYAIRNERPAITREDFLSAIEKVR 420          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 199.519 bits (506), Expect = 1.258e-50
Identity = 101/194 (52.06%), Postives = 133/194 (68.56%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A  T+  F +++G  LVQ +IG+G+++VR+ F +A+E +P IIF+DEID+IG+ R +    GD EVQRTMLELLNQLDGF +   IK+I ATNR DILDPAL+R GR+DRKIE P PS  ARA IL+IHSRKM +   +N  ++A   +  +GA +K VC EAGM ALR     V  EDF   + +V  K +
Sbjct:  201 AVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQ 394          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.258e-50
Identity = 104/192 (54.17%), Postives = 133/192 (69.27%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ FIG+GA++VR+ F +A+E +P IIF+DEID+IG+ R +    GD EVQRTMLELLNQLDGF +   IKVI ATNR DILD AL+R GR+DRKIE P P+EEAR  IL+IHSRKM +   +N  ++A      +GA++K VC EAGM ALR     V  EDF   + +V  K
Sbjct:  197 AVAHHTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 387          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS10_SPETR (26S protease regulatory subunit S10B OS=Spermophilus tridecemlineatus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.258e-50
Identity = 96/194 (49.48%), Postives = 135/194 (69.59%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A+Q +  F K+    +V  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQ+DGF +  R+K+I ATNR D LDPAL+R GRLDRKI +  P+E+AR  IL+IH+  +T H ++++E + + +D FNGA L+ VC EAGM A+R D   V  EDF + + +V   KK
Sbjct:  186 AVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKK 379          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS10_MOUSE (26S protease regulatory subunit S10B OS=Mus musculus GN=Psmc6 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.258e-50
Identity = 96/194 (49.48%), Postives = 135/194 (69.59%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A+Q +  F K+    +V  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQ+DGF +  R+K+I ATNR D LDPAL+R GRLDRKI +  P+E+AR  IL+IH+  +T H ++++E + + +D FNGA L+ VC EAGM A+R D   V  EDF + + +V   KK
Sbjct:  186 AVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKK 379          
The following BLAST results are available for this feature:
BLAST of CN188501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS8A_ARATH1.138e-5152.8526S protease regulatory subunit 8 homolog A OS=Ara... [more]
PRS10_DICDI1.941e-5148.4526S protease regulatory subunit S10B OS=Dictyostel... [more]
PSMR_METAC2.535e-5150.79Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS4_YEAST2.535e-5152.3326S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS8_SCHPO3.310e-5154.4026S protease regulatory subunit 8 homolog OS=Schiz... [more]
PSMR_METB64.324e-5152.11Proteasome-activating nucleotidase OS=Methanoregul... [more]
PRS8_YEAST1.258e-5052.0626S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_XENLA1.258e-5054.1726S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS10_SPETR1.258e-5049.4826S protease regulatory subunit S10B OS=Spermophil... [more]
PRS10_MOUSE1.258e-5049.4826S protease regulatory subunit S10B OS=Mus muscul... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188501 ID=CN188501; Name=CN188501; organism=Citrus sinensis; type=EST; length=661bp
CCGTAAGAGGTGCTTGTGCAGCACAAACAAATGCTACCTTCTTTAAAATC
GCAGGCCCTCTTCTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAAT
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