CN188501

Overview
NameCN188501
Unique NameCN188501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS10_HUMAN (26S protease regulatory subunit S10B OS=Homo sapiens GN=PSMC6 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.258e-50
Identity = 96/194 (49.48%), Postives = 135/194 (69.59%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A+Q +  F K+    +V  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQ+DGF +  R+K+I ATNR D LDPAL+R GRLDRKI +  P+E+AR  IL+IH+  +T H ++++E + + +D FNGA L+ VC EAGM A+R D   V  EDF + + +V   KK
Sbjct:  186 AVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKK 379          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_PONAB (26S protease regulatory subunit 7 OS=Pongo abelii GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 1.643e-50
Identity = 104/202 (51.49%), Postives = 134/202 (66.34%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            A A +T+A F ++ G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  IL+IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  228 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHILKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 199.134 bits (505), Expect = 1.643e-50
Identity = 95/194 (48.97%), Postives = 136/194 (70.10%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A+Q +  F K+    +V  +IG+ A+++R+ F  A++  PCI+F+DEIDAIG +RF    S DRE+QRT++ELLNQLDGF S  ++KVI ATNR D LDPAL+R GRLDRKIE+  P+E++R  IL+IHS K+T H +++FE + + +D F+ A L+ VC EAGM A+R +   V  EDF + + +V   K+
Sbjct:  203 AVASQLDCNFLKVVSSAIVDKYIGESARMIREMFNYARDHQPCIVFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDSLGKVKVIMATNRPDTLDPALLRPGRLDRKIEIGLPNEQSRLEILKIHSNKITKHGEIDFEAVVKLSDGFSAADLRNVCTEAGMFAIRAEREFVIDEDFMKAVRKVGDAKR 396          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS4_SCHPO (26S protease regulatory subunit 4 homolog OS=Schizosaccharomyces pombe GN=mts2 PE=2 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 2.802e-50
Identity = 101/185 (54.59%), Postives = 131/185 (70.81%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDR-IKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNE 563
            A A QT+ATF ++ G  L+Q ++GDG +LVR  F  A+E SP I+FIDEIDAIGTKR+D++   +RE+QRTMLELLNQLDGF +  R IKVI ATNR   LDPAL+R GR+DRKI   +P E  + +I  IH+ KM +  DVN EEL +  DD +GA++KA+  EAG+LALR     V  +DF +
Sbjct:  244 AVANQTSATFLRVVGSELIQKYLGDGPRLVRQLFNAAEEHSPSIVFIDEIDAIGTKRYDAQSGAEREIQRTMLELLNQLDGFDTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDVNLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQ 428          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_DICDI (26S protease regulatory subunit 8 OS=Dictyostelium discoideum GN=psmC5 PE=1 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 3.660e-50
Identity = 101/193 (52.33%), Postives = 136/193 (70.47%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ +IG+G+++VR+ F +A+E +P IIF+DEID+IG+ R +S    GD EVQRTMLELLNQLDGF S   IKV+  TNR DILDPAL+R GR+DRKIE P+P +  R  IL+IHSRKM +   +N ++++   +  +GA+LKAVC EAGM ALR     V+ EDF   + +V  K
Sbjct:  198 AVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFIMAREHAPSIIFMDEIDSIGSSRGESGSGGGDSEVQRTMLELLNQLDGFESTKNIKVLMCTNRIDILDPALLRPGRIDRKIEFPNPGDAGRLDILKIHSRKMNLTRGINLKKISDKMNGASGAELKAVCTEAGMYALRERRVHVSQEDFEMAVSKVMKK 390          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_XENLA (26S protease regulatory subunit 7 OS=Xenopus laevis GN=psmc2 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.660e-50
Identity = 103/202 (50.99%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            A A +T+A F ++ G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  228 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_DICDI (26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.660e-50
Identity = 104/202 (51.49%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI---IQVQAKKKASLNY 608
            A A +T+A F ++ G  LVQ ++G+GA++VRD FQ+A+ K  CIIF DE+DAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPAL+R GRLDRK+E   P  E RA I  IH++ M+   D+ FE LAR   +  GA +++VC EAGM A+R     V+ +DF E I   I+  AK  A+  Y
Sbjct:  223 AVANRTDAAFVRVIGSELVQKYVGEGARMVRDLFQMARSKKACIIFFDEVDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRAHIFTIHAKTMSCARDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKVVSEKDFLEAIDKVIKSYAKFSATSRY 424          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS10_BOVIN (26S protease regulatory subunit S10B OS=Bos taurus GN=PSMC6 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 3.660e-50
Identity = 96/194 (49.48%), Postives = 134/194 (69.07%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A+Q +  F K+    +V  +IG+ A+L+R+ F  A++  PCIIF+DEIDAIG +RF    S DRE+QRT++ELLNQ+DGF +  R+K+I ATNR D LDPAL+R GRLDRKI +  P+E+AR  IL+IH+  +T H ++++E + + +D FNGA L  VC EAGM A+R D   V  EDF + + +V   KK
Sbjct:  186 AVASQLDCNFLKVVSSSIVDKYIGESARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFDTLHRVKMIMATNRPDTLDPALLRPGRLDRKIHIDLPNEQARLDILKIHAGPITKHGEIDYEAIVKLSDGFNGADLGNVCTEAGMFAIRADHDFVVQEDFMKAVRKVADSKK 379          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_MOUSE (26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5)

HSP 1 Score: 197.593 bits (501), Expect = 4.780e-50
Identity = 103/202 (50.99%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            A A +T+A F ++ G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  228 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_MACFA (26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 4.780e-50
Identity = 103/202 (50.99%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            A A +T+A F ++ G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  228 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
The following BLAST results are available for this feature:
BLAST of CN188501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS10_HUMAN1.258e-5049.4826S protease regulatory subunit S10B OS=Homo sapie... [more]
PRS7_PONAB1.643e-5051.4926S protease regulatory subunit 7 OS=Pongo abelii ... [more]
PRS10_CAEEL1.643e-5048.97Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS4_SCHPO2.802e-5054.5926S protease regulatory subunit 4 homolog OS=Schiz... [more]
PRS8_DICDI3.660e-5052.3326S protease regulatory subunit 8 OS=Dictyostelium... [more]
PRS7_XENLA3.660e-5050.9926S protease regulatory subunit 7 OS=Xenopus laevi... [more]
PRS7_DICDI3.660e-5051.4926S protease regulatory subunit 7 OS=Dictyostelium... [more]
PRS10_BOVIN3.660e-5049.4826S protease regulatory subunit S10B OS=Bos taurus... [more]
PRS7_MOUSE4.780e-5050.9926S protease regulatory subunit 7 OS=Mus musculus ... [more]
PRS7_MACFA4.780e-5050.9926S protease regulatory subunit 7 OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188501 ID=CN188501; Name=CN188501; organism=Citrus sinensis; type=EST; length=661bp
CCGTAAGAGGTGCTTGTGCAGCACAAACAAATGCTACCTTCTTTAAAATC
GCAGGCCCTCTTCTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAAT
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