CN188501

Overview
NameCN188501
Unique NameCN188501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_HUMAN (26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 4.780e-50
Identity = 103/202 (50.99%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            A A +T+A F ++ G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  228 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_BOVIN (26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3)

HSP 1 Score: 197.593 bits (501), Expect = 4.780e-50
Identity = 103/202 (50.99%), Postives = 133/202 (65.84%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            A A +T+A F ++ G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  228 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_METHJ (Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.065e-49
Identity = 98/182 (53.85%), Postives = 131/182 (71.98%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 557
            A A +T+A F    G  LVQ +IG+GA+LVR+ F LAKEK+P I+FIDEIDAIG  R ++  SGDREVQRT+++LL  +DGF     +K+I ATNR DILD AL+R GR DR IE+P P  E R  IL++H+R M +  DV+  E+AR T+  NGA+L A+C+EAGM A+R++  +V+ EDF
Sbjct:  206 AVAHETHAIFLHTVGSELVQKYIGEGARLVRELFDLAKEKAPSIVFIDEIDAIGASRTEAMTSGDREVQRTLMQLLAAMDGFEPRGDVKIIGATNRIDILDAALLRPGRFDRIIEIPLPDTEGRYSILKVHTRCMNLSEDVDLMEVARLTEGRNGAELNAICMEAGMFAIRKEHPQVDQEDF 387          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.065e-49
Identity = 100/193 (51.81%), Postives = 134/193 (69.43%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDS-EVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAK 587
            A A  T+ TF +++G  LVQ +IG+G+K+VR+ F +A+E +P IIF+DEID+IG+ R +  +  GD EVQRTMLELLNQLDGF S   IK+I ATNR DILDPAL+R GR+DRKIE P+P+E AR  IL+IHSR+M +   +N  ++A      +GA++KA C EAGM ALR     V  ED    + +V  +
Sbjct:  209 AVAHHTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMKR 401          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_RAT (26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 1.065e-49
Identity = 103/202 (50.99%), Postives = 132/202 (65.35%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEG---IIQVQAKKKASLNY 608
            A A +T+A F  + G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDAIG  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRKIE   P  E R  I +IH+R M+V  D+ FE LAR   +  GA++++VC EAGM A+R        +DF E    +I+  AK  A+  Y
Sbjct:  228 AVANRTDACFIPVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKIEFSLPDLEGRTHIFKIHARSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLEAVNKVIKSYAKFSATPRY 429          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_METPE (Proteasome-activating nucleotidase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=pan PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.391e-49
Identity = 99/186 (53.23%), Postives = 129/186 (69.35%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGI 569
            A A QT A F ++ G  LVQ +IG+GA+LVR+ F+LAK+KSP IIFIDEIDAIG  R +S  SGDREV RT+++LL ++DGFS+   +++I ATNR DILD AL+R GR DR IE+P P  E R  IL IH   M +   V+  ++A  TD  NGA L+++C+EAGM A+R D   V  EDF + I
Sbjct:  206 AVAHQTEAHFLRVVGSELVQKYIGEGARLVRELFELAKKKSPSIIFIDEIDAIGASRTESNTSGDREVHRTLMQLLAEMDGFSNRGDVRIIGATNRIDILDRALLRPGRFDRIIEIPAPDIEGRVSILNIHCAGMNIDKKVDIRDIATRTDGKNGADLRSICMEAGMFAIRSDHEMVTLEDFEQSI 391          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.391e-49
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            A A +T+A F ++ G  LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E+R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  220 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 408          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7A_ARATH (26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.391e-49
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            A A +T+A F ++ G  LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E+R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_SPIOL (26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.817e-49
Identity = 96/189 (50.79%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            A A +T+A F ++ G  LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_ORYSJ (26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.817e-49
Identity = 96/189 (50.79%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            A A +T+A F ++ G  LVQ ++G+GA++VR+ FQ+A+ K  CI+F DE+DAIG  RFD  V GD EVQRTMLE++NQLDGF +   IKV+ ATNR D LDPAL+R GRLDRK+E   P  E R +I +IH+R M    D+ FE LAR   +  GA +++VC EAGM A+R     V  +DF + + +V
Sbjct:  221 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKV 409          
The following BLAST results are available for this feature:
BLAST of CN188501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS7_HUMAN4.780e-5050.9926S protease regulatory subunit 7 OS=Homo sapiens ... [more]
PRS7_BOVIN4.780e-5050.9926S protease regulatory subunit 7 OS=Bos taurus GN... [more]
PSMR_METHJ1.065e-4953.85Proteasome-activating nucleotidase OS=Methanospiri... [more]
PRS8_NAEFO1.065e-4951.8126S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS7_RAT1.065e-4950.9926S protease regulatory subunit 7 OS=Rattus norveg... [more]
PSMR_METPE1.391e-4953.23Proteasome-activating nucleotidase OS=Methanosphae... [more]
PRS7_PRUPE1.391e-4950.7926S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7A_ARATH1.391e-4950.7926S protease regulatory subunit 7 homolog A OS=Ara... [more]
PRS7_SPIOL1.817e-4950.7926S protease regulatory subunit 7 OS=Spinacia oler... [more]
PRS7_ORYSJ1.817e-4950.7926S protease regulatory subunit 7 OS=Oryza sativa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188501 ID=CN188501; Name=CN188501; organism=Citrus sinensis; type=EST; length=661bp
CCGTAAGAGGTGCTTGTGCAGCACAAACAAATGCTACCTTCTTTAAAATC
GCAGGCCCTCTTCTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAAT
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