CN188501

Overview
NameCN188501
Unique NameCN188501
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2137 contig Csv1_Contig2137:697..1357. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.099e-49
Identity = 94/198 (47.47%), Postives = 136/198 (68.69%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLN 605
            A A ++NATF ++      Q F+G+GA++VR+ F+LA+ K+P I+FIDEIDAIG KR D   SG+RE+QRT+++LL ++DGF   D +K+IAATNR DILDPAL+R GR DR IE+P P+ E R  I +I+ +KM    ++ ++ LA  T+ F+GA++K VC EAG +A+R     VN  D    I +++AK   + N
Sbjct:  187 AVATESNATFIQVVASEFAQKFVGEGARIVREVFELARRKAPSIVFIDEIDAIGAKRVDMGTSGEREIQRTLMQLLAEIDGFKPLDNVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIRNGRKYVNMTDLITAIEKIKAKNNKAKN 384          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS7_CAEEL (26S protease regulatory subunit 7 OS=Caenorhabditis elegans GN=rpt-1 PE=1 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.285e-49
Identity = 96/189 (50.79%), Postives = 130/189 (68.78%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQV 578
            A A +T+A F ++ G  LVQ ++G+GA++VR+ F++A+ K  C+IF DEIDA+G  RFD    GD EVQRTMLEL+NQLDGF     IKV+ ATNR D LDPALMR GRLDRK+E   P    RA IL+IH+++M+V  D+ ++ LAR   +  GA++++VC EAGM A+R        +DF E I +V
Sbjct:  230 AVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTKKACLIFFDEIDAVGGARFDDGQGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPDTLDPALMRPGRLDRKVEFALPDLAGRAHILKIHAKQMSVERDIRYDLLARLCPNSTGAEIRSVCTEAGMFAIRARRKVATEKDFLEAINKV 418          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.903e-49
Identity = 100/194 (51.55%), Postives = 133/194 (68.56%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A + NATF ++ G  LV+ +IG+GA+LV + F+LAKEK+P IIFIDEIDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  E R  IL++H+R+M +   V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + I +V   +K
Sbjct:  190 AIAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKLR-GVDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAIDKVLGNEK 382          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.015e-49
Identity = 99/197 (50.25%), Postives = 134/197 (68.02%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 602
            A A + NATF ++ G  LV+ +IG+GA+LV + F+LAKEK+P IIFIDEIDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  E R  IL++H+R+M +   V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + + +V   ++  L
Sbjct:  193 ALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNERKLL 388          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 9.015e-49
Identity = 99/197 (50.25%), Postives = 135/197 (68.53%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASL 602
            A A + NATF ++ G  LV+ +IG+GA+LV + F+LAKEK+P IIFIDEIDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  E R  IL++H+R+M +  +V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + + +V   ++  L
Sbjct:  193 ALAHEVNATFIRVVGSELVRKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNERKLL 388          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.008e-48
Identity = 99/194 (51.03%), Postives = 132/194 (68.04%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A   NATF ++ G  LV+ FIG+GA+LV + F+LAKEK+P IIFIDEIDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P  + R  IL++H+RKM +   V+   +A  T+  +GA LKA+  EAGM A+R   T V  +DF + + +V   +K
Sbjct:  191 AVANHVNATFIRVVGSELVRKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVIGSEK 383          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.008e-48
Identity = 95/200 (47.50%), Postives = 131/200 (65.50%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYY 611
            A A  T+A F ++ G   VQ ++G+G +LVRD F+LA+E SP IIFIDEIDAI TKRFD++   DREVQR ++ELLNQ+DGF     +KVI ATNR D LDPAL+R GRLDRKIE P P    +  I Q+ + KM +  +V+ E+     D  +GA+++++C EAGM A+R++   +  +DF +G      K     N+Y
Sbjct:  203 AVAHHTSAAFIRVVGSEFVQKYLGEGPRLVRDVFRLARENSPAIIFIDEIDAIATKRFDAQTGADREVQRILMELLNQMDGFDVSVNVKVIMATNRQDTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQVITSKMNLSDEVDLEDYVSRPDKLSGAEIQSICQEAGMHAIRKNRYVILPKDFEKGYKASIKKNTHEFNFY 402          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.623e-48
Identity = 93/193 (48.19%), Postives = 131/193 (67.88%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKK 590
            A A ++NA F  +      Q F+G+GA++VR+ F++AK K+P IIFIDEIDAIG KR D   SG+RE+QRT+++LL +LDGF   D +K+IAATNR DILDPAL+R GR DR IE+P P  + R  I  I+ +KM +  ++N E L++ T+ F+GA +K VCVEA  +A+R    +V   D  E I ++  K+
Sbjct:  187 AVATESNAVFIHVVASEFAQKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGTSGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMNDLVEAINKINVKR 379          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.623e-48
Identity = 97/182 (53.30%), Postives = 128/182 (70.33%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDF 557
            A A QT+ATF ++ G  L+Q ++G+G KLVR+ F++A   +P IIFIDEIDAIG KR+++   G REVQRTMLELLNQLDGF + + IKVI ATN+ + LDPAL+R GR+DRKIE   P    + +I  IH+ +MT+   VN E L  S +D +GA +KA+C EAGM+ALR     V  +DF
Sbjct:  222 AVANQTSATFLRVVGTELIQEYLGEGPKLVRELFRVADMHAPSIIFIDEIDAIGGKRYNTSSGGRREVQRTMLELLNQLDGFDTRNDIKVIMATNKIEALDPALIRPGRIDRKIEFGMPDAATKKKIFDIHTSRMTLDESVNIELLITSKEDLSGADIKAICTEAGMIALRERRKTVTMKDF 403          
BLAST of CN188501 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.426e-48
Identity = 99/194 (51.03%), Postives = 132/194 (68.04%), Query Frame = 3
Query:   12 ACAAQTNATFFKIAGPLLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDDRIKVIAATNRADILDPALMRSGRLDRKIELPHPSEEARARILQIHSRKMTVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKK 593
            A A   NATF ++ G  LV+ FIG+GA+LV + F++AKEK+P IIFIDEIDAIG KR D    G+REV RT+++LL ++DGF     +KVIAATNR DILDPAL+R GR DR IE+P P    R  IL++H+RKM +  +V+   +A  T+  +GA LKA+  EAGM A+R   T V  EDF + + +V   +K
Sbjct:  191 AVANHVNATFIRVVGSELVRKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNLR-NVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVLGAEK 383          
The following BLAST results are available for this feature:
BLAST of CN188501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PSMR_SULTO3.099e-4947.47Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PRS7_CAEEL5.285e-4950.7926S protease regulatory subunit 7 OS=Caenorhabditi... [more]
PSMR_PYRFU6.903e-4951.55Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_PYRHO9.015e-4950.25Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRAB9.015e-4950.25Proteasome-activating nucleotidase OS=Pyrococcus a... [more]
PSMR_PYRKO2.008e-4851.03Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS6B_DICDI2.008e-4847.5026S protease regulatory subunit 6B homolog OS=Dict... [more]
PSMR_SULSO2.623e-4848.19Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PRS4_ENCCU2.623e-4853.3026S protease regulatory subunit 4 homolog OS=Encep... [more]
PSMR_THEGJ3.426e-4851.03Proteasome-activating nucleotidase OS=Thermococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C17_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188501 ID=CN188501; Name=CN188501; organism=Citrus sinensis; type=EST; length=661bp
CCGTAAGAGGTGCTTGTGCAGCACAAACAAATGCTACCTTCTTTAAAATC
GCAGGCCCTCTTCTAGTCCAGATGTTCATTGGAGATGGAGCCAAACTAGT
TCGTGATGCCTTTCAACTTGCAAAGGAGAAGTCCCCCTGCATTATTTTCA
TCGACGAAATTGACGCAATTGGTACAAAGCGGTTTGACAGTGAAGTGAGT
GGAGACAGGGAGGTGCAGCGAACTATGTTAGAGTTGCTCAATCAGCTCGA
TGGATTTAGCAGCGATGATCGGATTAAGGTCATAGCAGCAACAAATCGTG
CTGATATCCTGGACCCTGCTCTTATGCGATCTGGCCGTTTGGATCGCAAG
ATCGAGTTACCACATCCGAGTGAGGAAGCTAGAGCTCGCATTTTGCAAAT
CCATTCGAGGAAGATGACTGTTCACCCGGATGTCAACTTCGAAGAACTTG
CTCGATCCACTGACGATTTCAATGGGGCACAACTAAAAGCTGTTTGTGTT
GAAGCAGGGATGCTTGCTCTTCGCCGTGATGCGACTGAGGTCAACCATGA
GGATTTCAATGAAGGTATCATTCAGGTGCAGGCTAAGAAAAAGGCTAGCT
TAAACTACTATGCATAGACACATCCAAAGGCGAAGTTTTAGCCTCTACTT
CAATTGGTAAT
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