CN188496

Overview
NameCN188496
Unique NameCN188496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188496_ssr160 microsatellite CN188496_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:9..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_CANAL (Small COPII coat GTPase SAR1 OS=Candida albicans GN=SAR1 PE=3 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.171e-31
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++FDWF  IL+SLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIFDWFQDILSSLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGSVRFTTFDLGGHQQARRLWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_PICPG (Small COPII coat GTPase SAR1 OS=Pichia pastoris (strain GS115) GN=SAR1 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 7.593e-31
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WF  +LASLGLW K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEELSIG ++F  FDLGGH+ ARRVWKDY
Sbjct:    1 MWVLNWFQDVLASLGLWNKHAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELSIGNVRFTTFDLGGHEQARRVWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.921e-30
Identity = 60/84 (71.43%), Postives = 69/84 (82.14%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY +L+SLGLW K AK+LFLGLDNAGKTTLLHMLK++R+    PT HPTSEELSIG  KF  FDLGGH  ARRVWKDY
Sbjct:    1 MWIVNWFYDVLSSLGLWNKNAKLLFLGLDNAGKTTLLHMLKNDRMAVSNPTVHPTSEELSIGNCKFTTFDLGGHIQARRVWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_DICDI (GTP-binding protein Sar1A OS=Dictyostelium discoideum GN=sarA PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 4.921e-30
Identity = 61/84 (72.62%), Postives = 72/84 (85.71%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MFLFDWF+ +L+ LGL+ K AKILFLGLDNAGKTTLL +LKD RL  + PT HPTSEEL++G I+FKAFDLGGH+ ARR+WKDY
Sbjct:    1 MFLFDWFWNVLSFLGLYNKNAKILFLGLDNAGKTTLLGVLKDGRLSSYLPTFHPTSEELAMGNIRFKAFDLGGHESARRLWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.428e-30
Identity = 61/84 (72.62%), Postives = 71/84 (84.52%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MF+ +WF+ ILA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG++KF  +DLGGHQ ARR+WKDY
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.870e-29
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  597 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            LF WF  IL+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+WKDY
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDY 87          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_CHAGB (Small COPII coat GTPase SAR1 OS=Chaetomium globosum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.870e-29
Identity = 59/84 (70.24%), Postives = 71/84 (84.52%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY +L+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEELSIG ++F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSIGNVRFTTFDLGGHQQARRLWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  597 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+WKDY
Sbjct:    6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDY 87          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29
Identity = 60/82 (73.17%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  597 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            +F WF  +LASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+WKDY
Sbjct:    5 VFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDY 86          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.442e-29
Identity = 61/82 (74.39%), Postives = 67/82 (81.71%), Query Frame = 3
Query:  597 LFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            LF WF  IL+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG IKF  FDLGGH  ARR+WKDY
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDY 87          
The following BLAST results are available for this feature:
BLAST of CN188496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_CANAL1.171e-3173.81Small COPII coat GTPase SAR1 OS=Candida albicans G... [more]
SAR1_PICPG7.593e-3172.62Small COPII coat GTPase SAR1 OS=Pichia pastoris (s... [more]
SAR1_YARLI4.921e-3071.43Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1A_DICDI4.921e-3072.62GTP-binding protein Sar1A OS=Dictyostelium discoid... [more]
SAR1_USTMA6.428e-3072.62Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_KLULA1.870e-2974.39Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_CHAGB1.870e-2970.24Small COPII coat GTPase SAR1 OS=Chaetomium globosu... [more]
SAR1_YEAST2.442e-2973.17Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_CANGA2.442e-2973.17Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_ASHGO2.442e-2974.39Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188496 ID=CN188496; Name=CN188496; organism=Citrus sinensis; type=EST; length=843bp
GCATAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAACAAAAATA
AACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATTGGCATCCA
AGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACAATAACTAT
AGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCAAGGGAAAA
AAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGCCAGCCGGA
AAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTACTCTACCCA
ACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAATTTACCACC
TGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGCATCACTCC
CAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAACCCTAAGA
TTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCGTTGATTCC
TCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTCGATCTTTT
TGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCATGTTTTTGT
TTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGCAAAAAGAG
GCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACGACGCTGCT
TCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAACACAACATC
CCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGGCTTTTGAT
TTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTACT
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