CN188496

Overview
NameCN188496
Unique NameCN188496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188496_ssr160 microsatellite CN188496_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:9..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_NEUCR (Small COPII coat GTPase sar-1 OS=Neurospora crassa GN=sar-1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.190e-29
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M+L+ WFY IL++LGL  K  K+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEELS+G +KF  FDLGGHQ ARR+WKDY
Sbjct:    1 MWLWSWFYDILSNLGLLNKHGKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELSVGNVKFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.190e-29
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.166e-29
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_MAGGR (Small COPII coat GTPase SAR1 OS=Magnaporthe grisea GN=SAR1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.166e-29
Identity = 58/84 (69.05%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY +L+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ASPCL (Small COPII coat GTPase sar1 OS=Aspergillus clavatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.166e-29
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_TRIRE (Small COPII coat GTPase sar1 OS=Trichoderma reesei GN=sar1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 57/84 (67.86%), Postives = 71/84 (84.52%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY +L+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+W+DY
Sbjct:    1 MWIVNWFYDVLSSLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTLHPTSEELAIGNVRFNTFDLGGHQQARRIWRDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_SCHPO (Small COPII coat GTPase sar1 OS=Schizosaccharomyces pombe GN=sar1 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 59/84 (70.24%), Postives = 69/84 (82.14%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MF+ +WFY  LA LGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG ++F  FDLGGHQ ARR+W+DY
Sbjct:    1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQARRLWRDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ASPTN (Small COPII coat GTPase sar1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sar1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ASPOR (Small COPII coat GTPase sar1 OS=Aspergillus oryzae GN=sar1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDY 84
[Close]
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNG (Small COPII coat GTPase SAR1 OS=Aspergillus niger GN=sar1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 3 
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M+L +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDY 84
The following BLAST results are available for this feature:
BLAST of CN188496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_NEUCR3.190e-2970.24Small COPII coat GTPase sar-1 OS=Neurospora crassa... [more]
SAR1_ASPFU3.190e-2971.43Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_NEOFI4.166e-2970.24Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]
SAR1_MAGGR4.166e-2969.05Small COPII coat GTPase SAR1 OS=Magnaporthe grisea... [more]
SAR1_ASPCL4.166e-2970.24Small COPII coat GTPase sar1 OS=Aspergillus clavat... [more]
SAR1_TRIRE5.441e-2967.86Small COPII coat GTPase sar1 OS=Trichoderma reesei... [more]
SAR1_SCHPO5.441e-2970.24Small COPII coat GTPase sar1 OS=Schizosaccharomyce... [more]
SAR1_ASPTN5.441e-2971.43Small COPII coat GTPase sar1 OS=Aspergillus terreu... [more]
SAR1_ASPOR5.441e-2970.24Small COPII coat GTPase sar1 OS=Aspergillus oryzae... [more]
SAR1_ASPNG5.441e-2971.43Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188496 ID=CN188496; Name=CN188496; organism=Citrus sinensis; type=EST; length=843bp
GCATAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAACAAAAATA
AACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATTGGCATCCA
AGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACAATAACTAT
AGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCAAGGGAAAA
AAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGCCAGCCGGA
AAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTACTCTACCCA
ACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAATTTACCACC
TGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGCATCACTCC
CAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAACCCTAAGA
TTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCGTTGATTCC
TCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTCGATCTTTT
TGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCATGTTTTTGT
TTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGCAAAAAGAG
GCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACGACGCTGCT
TCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAACACAACATC
CCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGGCTTTTGAT
TTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTACT
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