CN188496

Overview
NameCN188496
Unique NameCN188496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188496_ssr160 microsatellite CN188496_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:9..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ASPNC (Small COPII coat GTPase SAR1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sar1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.441e-29
Identity = 60/84 (71.43%), Postives = 70/84 (83.33%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M+L +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWLINWFYDLLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.107e-29
Identity = 58/84 (69.05%), Postives = 70/84 (83.33%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MF+ +WF+ +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG +KF  +DLGGH  ARR+W+DY
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_CAEEL (GTP-binding protein SAR1 OS=Caenorhabditis elegans GN=ZK180.4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.212e-28
Identity = 57/83 (68.67%), Postives = 68/83 (81.93%), Query Frame = 3
Query:  594 FLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            FL+DWF G+L  LGL  K+ K++FLGLDNAGKTTLLHMLKD+R+ QH PT HPTSE++S+G I F  +DLGGH  ARRVWKDY
Sbjct:    3 FLWDWFNGVLNMLGLANKKGKLVFLGLDNAGKTTLLHMLKDDRIAQHVPTLHPTSEQMSLGGISFTTYDLGGHAQARRVWKDY 85          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_EMENI (Small COPII coat GTPase sar1 OS=Emericella nidulans GN=sar1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.606e-28
Identity = 59/84 (70.24%), Postives = 68/84 (80.95%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+    PT HPTSEEL IG  +F  FDLGGHQ ARR+WKDY
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVAILSPTAHPTSEELVIGNNRFTTFDLGGHQQARRLWKDY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_MOUSE (GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVWK+Y
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_PONAB (GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVWK+Y
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_PIG (GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVWK+Y
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_HUMAN (GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVWK+Y
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_BOVIN (GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 56/87 (64.37%), Postives = 68/87 (78.16%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVWK+Y
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVWK+Y
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHLQARRVWKNY 89          
The following BLAST results are available for this feature:
BLAST of CN188496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1_ASPNC5.441e-2971.43Small COPII coat GTPase SAR1 OS=Aspergillus niger ... [more]
SAR1_CRYNE7.107e-2969.05Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_CAEEL1.212e-2868.67GTP-binding protein SAR1 OS=Caenorhabditis elegans... [more]
SAR1_EMENI4.606e-2870.24Small COPII coat GTPase sar1 OS=Emericella nidulan... [more]
SAR1B_MOUSE2.528e-2665.52GTP-binding protein SAR1b OS=Mus musculus GN=Sar1b... [more]
SAR1A_PONAB2.528e-2664.37GTP-binding protein SAR1a OS=Pongo abelii GN=SAR1A... [more]
SAR1A_PIG2.528e-2664.37GTP-binding protein SAR1a OS=Sus scrofa GN=SAR1A P... [more]
SAR1A_HUMAN2.528e-2664.37GTP-binding protein SAR1a OS=Homo sapiens GN=SAR1A... [more]
SAR1A_BOVIN2.528e-2664.37GTP-binding protein SAR1a OS=Bos taurus GN=SAR1A P... [more]
SAR1B_RAT3.301e-2665.52GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188496 ID=CN188496; Name=CN188496; organism=Citrus sinensis; type=EST; length=843bp
GCATAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAACAAAAATA
AACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATTGGCATCCA
AGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACAATAACTAT
AGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCAAGGGAAAA
AAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGCCAGCCGGA
AAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTACTCTACCCA
ACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAATTTACCACC
TGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGCATCACTCC
CAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAACCCTAAGA
TTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCGTTGATTCC
TCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTCGATCTTTT
TGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCATGTTTTTGT
TTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGCAAAAAGAG
GCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACGACGCTGCT
TCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAACACAACATC
CCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGGCTTTTGAT
TTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTACT
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