CN188496

Overview
NameCN188496
Unique NameCN188496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length843
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188496_ssr160 microsatellite CN188496_ssr160:160..171. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2662 contig Csv1_Contig2662:9..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_PIG (GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVWK+Y
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_HUMAN (GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVWK+Y
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_BOVIN (GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.301e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVWK+Y
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHVQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_CRIGR (GTP-binding protein SAR1b OS=Cricetulus griseus GN=SAR1B PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.311e-26
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+FDW Y     +L  LGL++K  K++FLGLDNAGKTTLLHMLKD+RL QH PT HPTSEEL+I  + F  FDLGGH  ARRVWK+Y
Sbjct:    3 FIFDWIYSGFSSVLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 2.140e-25
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 3
Query:  612 YGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            + +L+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEELSIG +KF  FDLGGH  ARR+W+DY
Sbjct:    4 WDVLSSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDY 80          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.140e-25
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 3
Query:  594 FLFDWFYG----ILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            F+F+W Y     +L  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT HPTSEEL+I  + F  FDLGGH+ ARRVWK+Y
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNY 89          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.448e-21
Identity = 46/80 (57.50%), Postives = 62/80 (77.50%), Query Frame = 3
Query:  603 DWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            DWF   L+ LGL++K+A I+F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W+ Y
Sbjct:    5 DWFKSALSFLGLYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.029e-19
Identity = 45/84 (53.57%), Postives = 56/84 (66.67%), Query Frame = 3
Query:  591 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            MFL DWFY +   LG ++KEAKI+ +GL NAGKTTLLH+L    L  H PT  P +E  + G + FKA+DLGG Q  R +WK Y
Sbjct:    1 MFLVDWFYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQY 84          
BLAST of CN188496 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.439e-13
Identity = 34/69 (49.28%), Postives = 47/69 (68.12%), Query Frame = 3
Query:  636 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDY 842
            L+ K + ILFLG+DNAGKTTL++ LK +    + PT HP++  + IG +K +  DLGGH  AR  W+DY
Sbjct:   31 LFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDY 99          
The following BLAST results are available for this feature:
BLAST of CN188496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1B_PIG3.301e-2665.52GTP-binding protein SAR1b OS=Sus scrofa GN=SAR1B P... [more]
SAR1B_HUMAN3.301e-2665.52GTP-binding protein SAR1b OS=Homo sapiens GN=SAR1B... [more]
SAR1B_BOVIN3.301e-2665.52GTP-binding protein SAR1b OS=Bos taurus GN=SAR1B P... [more]
SAR1B_CRIGR4.311e-2665.52GTP-binding protein SAR1b OS=Cricetulus griseus GN... [more]
SAR1_PHANO2.140e-2570.13Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1A_MOUSE2.140e-2563.22GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_GIALA2.448e-2157.50GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_DICDI1.029e-1953.57GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_ENCCU1.439e-1349.28Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188496 ID=CN188496; Name=CN188496; organism=Citrus sinensis; type=EST; length=843bp
GCATAGATTCGCATCAACTGGAAAAGCCCCCAGTACCAATAACAAAAATA
AACATTCTACAGCATTTGAGATTGTAGATGGCAAAACAGATTGGCATCCA
AGTCTCCATATGCAATATCACTAAGAAAAAAAAAACCCTACAATAACTAT
AGAACCGAAAATAATAATAATACAGCAACATGCCTTCTCTCAAGGGAAAA
AAAAATATCTATTTTAAAACCTAAGCAAGTTAATTAAAATGCCAGCCGGA
AAATTTTCTTGGTATGCTTTTAGGTCCTACAGCATCCACTACTCTACCCA
ACAAATCAGAGCAGGAAAACAGTGTGATGCGGTGAAGTTAATTTACCACC
TGTTAGTGATTCACGGTATCCATATTAAGTGCTTCCAGCAGCATCACTCC
CAGCAGATTTGCGATTCATGTAACGGATGACAGCGTCTTCAACCCTAAGA
TTTGACAACCACCCCCCACCAACAAACGCTATCACGCACTCGTTGATTCC
TCCTAATTATCTCAAAGATTCATCATATTTGAGCCAAAATTCGATCTTTT
TGATAGATTCATTATAAATAAGGAGTAATAAAAGAAACCCATGTTTTTGT
TTGATTGGTTTTATGGGATTCTTGCATCTCTTGGGCTCTGGCAAAAAGAG
GCCAAGATCTTGTTTCTCGGCCTCGATAATGCCGGTAAAACGACGCTGCT
TCATATGTTGAAAGATGAGAGATTAGTTCAACATCAACCAACACAACATC
CCACTTCGGAGGAACTGAGTATTGGGAAAATCAAGTTTAAGGCTTTTGAT
TTGGGAGGGCATCAGATTGCTCGTAGAGTTTGGAAAGATTACT
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