CN188493

Overview
NameCN188493
Unique NameCN188493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13608 contig Csv1_Contig13608:606..1342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: MTDH3_STYHU (Probable mannitol dehydrogenase 3 OS=Stylosanthes humilis GN=CAD3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.477e-29
Identity = 73/185 (39.46%), Postives = 106/185 (57.30%), Query Frame = -1
Query:  180 SPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDK-KRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 731
            SPL ++GL +                    AK  G  +TVIS+S   K+ EA+++LGAD +LVS D  +M+   ++LD IIDTV A+H + P            L G I  P++     ++LGRK + G+ +G +KET+EM++F  +  V   IEV+ MDYVN A +RL K DV+YRFV+DVA +
Sbjct:  174 SPLKYYGLDKPGLHVGVVGLGGLGHMVAKFAKTHGLKITVISTSPPTKKEEAIKNLGADSFLVSRDPDQMEAPKETLDGIIDTVSADHSIVPLIGLLKSHGKLVLIGAIEKPLELPPFPLILGRKLVGGTLVGGLKETQEMIDFSPKHNVKPEIEVVPMDYVNIAMQRLAKADVKYRFVIDVANT 358          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.666e-28
Identity = 77/189 (40.74%), Postives = 101/189 (53.44%), Query Frame = -1
Query:  171 VFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGSKLD 737
            V+SP+ + GL                      AKA G  VTVISSS  KR EA+E LGAD ++VS +A  M  A  ++D II+TV AN P+ P            L G+   PM+     ++   K + GS IG M +T EM++   + GVT+ IEVI  DYVN A ERL K DVRYRFV+D+  +  D
Sbjct:  164 VYSPMKYHGLNVPSKHVGVLGLGGLGHVAVKFAKAFGMTVTVISSSPGKRQEALERLGADAFVVSKNADEMNAATGTMDGIINTVSANIPIAPLLGLLKPNGKMILVGLPEKPMEIPPFALVASNKTLAGSCIGGMADT-EMIDLAAKHGVTAEIEVIGADYVNTAMERLAKADVRYRFVIDIGNTLKD 351          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: CADH7_ORYSJ (Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa subsp. japonica GN=CAD7 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.358e-27
Identity = 71/186 (38.17%), Postives = 104/186 (55.91%), Query Frame = -1
Query:  180 VFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 737
            V++P+   GL ++                   A+A G  VTVIS+S  KR EA+E LGAD ++VS++A+ M+ A  ++  II+T  A+  +  Y           L G+   P+Q  T  ++ G K + GS +GS+ ET+EM++F  E GV + IE+I  D VN A ERL K DVRYRFVVD+  +
Sbjct:  190 VYAPMRQHGLCEAGKHVGVVGLGGLGHVAVKFARAFGMRVTVISTSPVKRQEALERLGADGFIVSTNASEMKAAMGTMHGIINTASASTSMHSYLALLKPKGKMILVGLPEKPLQIPTFALVGGGKILAGSCMGSISETQEMIDFAAEHGVAADIELIGADEVNTAMERLAKGDVRYRFVVDIGNT 375          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: CADH1_ORYSJ (Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza sativa subsp. japonica GN=CAD1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.737e-26
Identity = 65/188 (34.57%), Postives = 102/188 (54.26%), Query Frame = -1
Query:  180 VFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLT--PMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 737
            V+SP+    + Q                     KA G  VTVIS+S+ KR EA++ LGAD ++VSSD  +M+    SL++IIDT   +HP +PY           +  +++ P +       + LG ++++GS  G  K+ +EM+ FC    +   IE+IK+DY+N+A +RL   DVR+RFV+D+  S
Sbjct:  168 VYSPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVISTSESKRKEAIDLLGADNFVVSSDENQMETLKSSLNFIIDTASGDHPFDPY---LTLLKVGGVMALLSFPSEIKVHPANLNLGGRSLSGSVTGGTKDIQEMINFCAANKIYPDIEMIKIDYINEALQRLVDRDVRFRFVIDIENS 352          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: ADHA_BACSU (Probable formaldehyde dehydrogenase adhA OS=Bacillus subtilis GN=adhA PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.458e-24
Identity = 60/152 (39.47%), Postives = 90/152 (59.21%), Query Frame = -1
Query:  186 AKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVA 641
            A AMG  VTV+S S  K+ EA+E LGA+ Y  +SD       A   D I++TV AN  ++ Y             G    P  +    +++GR++I GS +G ++ET+EML+F  E G+   IEVI  D V++A+ER+ ++DVRYRFV+D++
Sbjct:  197 AHAMGAEVTVLSRSMNKKEEALE-LGANHYFATSDPATFTALAGRFDVILNTVSANLDVDAYLSMLRIDGTLVSVGAPAKPDTYSVFSLIMGRRSIAGSLVGGIQETQEMLDFAAEHGIEPKIEVIGADQVDEAYERILRSDVRYRFVIDIS 347          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: YAHK_ECOLI (Uncharacterized zinc-type alcohol dehydrogenase-like protein yahK OS=Escherichia coli (strain K12) GN=yahK PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.752e-23
Identity = 63/153 (41.18%), Postives = 94/153 (61.44%), Query Frame = -1
Query:  192 AKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMV---MLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVD 641
            A AMG HV   ++S+ KR EA + LGAD+ + S +A  M     S D+I++TV A H L+ +           L G   TP +  +P V   ++ R+AI GS IG + ET+EML+FC E G+ + IE+I+ D +N+A+ER+ + DV+YRFV+D
Sbjct:  194 AHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHK--SPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIVADIEMIRADQINEAYERMLRGDVKYRFVID 343          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: CADH4_ORYSJ (Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza sativa subsp. japonica GN=CAD4 PE=3 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 3.594e-23
Identity = 62/186 (33.33%), Postives = 94/186 (50.54%), Query Frame = -1
Query:  180 VFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 737
            V++P+    + Q                     KA G  VTV S+S+ KR EA+  LGAD +++SSD  +M+    SL +IIDT   +H  +PY           L     + ++     + L  +++ GS  G  K+ +EM+ FC    V   IE+IK+DYVN+A +RL   DVR+RFV+D+  S
Sbjct:  168 VYTPMIRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLKVTVFSTSESKREEAINLLGADNFVISSDENQMESLKSSLHFIIDTASGDHQFDPYLSLLKVGGVMVLLS-FPSEIKVHPENLNLAARSLAGSVTGGTKDIQEMINFCAANNVYPDIEMIKIDYVNEALQRLINRDVRFRFVIDIENS 352          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: ADHC_MYCTU (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium tuberculosis GN=adhC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 60/150 (40.00%), Postives = 85/150 (56.67%), Query Frame = -1
Query:  186 AMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVA 635
            AMG  VTV+S S KK  + +  LGA  Y  ++D    ++     D I++TV AN  L  Y             G+   PM      + L R+++ GS IG + ET+EML FC E GVT  IE+I+ DY+N A+ER+  +DVRYRFV+D++
Sbjct:  196 AMGADVTVLSQSLKKMEDGLR-LGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: ADHC_MYCBO (NADP-dependent alcohol dehydrogenase C OS=Mycobacterium bovis GN=adhC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.043e-22
Identity = 60/150 (40.00%), Postives = 85/150 (56.67%), Query Frame = -1
Query:  186 AMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVA 635
            AMG  VTV+S S KK  + +  LGA  Y  ++D    ++     D I++TV AN  L  Y             G+   PM      + L R+++ GS IG + ET+EML FC E GVT  IE+I+ DY+N A+ER+  +DVRYRFV+D++
Sbjct:  196 AMGADVTVLSQSLKKMEDGLR-LGAKSYYATADPDTFRKLRGGFDLILNTVSANLDLGQYLNLLDVDGTLVELGIPEHPMAVPAFALALMRRSLAGSNIGGIAETQEMLNFCAEHGVTPEIELIEPDYINDAYERVLASDVRYRFVIDIS 344          
BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: CADH1_ARATH (Probable cinnamyl alcohol dehydrogenase 1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.852e-22
Identity = 58/186 (31.18%), Postives = 94/186 (50.54%), Query Frame = -1
Query:  180 VFSPLSHFGLKQSXXXXXXXXXXXXXXXXXXIAKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKAITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 737
            V++P+    + Q                     KA G  VTV S+S  K+ EA+  LGA+ +++SSD  +M+    SLD+++DT   +H  +PY           L G   + ++     + LG + + GS  G  K T++ML+FC    +   IEVI +  +N+A ER+ K D++YRFV+D+  S
Sbjct:  169 VYAPMMRHNMNQPGKSLGVIGLGGLGHMAVKFGKAFGLSVTVFSTSISKKEEALNLLGAENFVISSDHDQMKALEKSLDFLVDTASGDHAFDPYMSLLKIAGTYVLVG-FPSEIKISPANLNLGMRMLAGSVTGGTKITQQMLDFCAAHKIYPNIEVIPIQKINEALERVVKKDIKYRFVIDIKNS 353          
The following BLAST results are available for this feature:
BLAST of CN188493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
MTDH3_STYHU7.477e-2939.46Probable mannitol dehydrogenase 3 OS=Stylosanthes ... [more]
CADH5_ORYSJ1.666e-2840.74Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
CADH7_ORYSJ5.358e-2738.17Cinnamyl alcohol dehydrogenase 7 OS=Oryza sativa s... [more]
CADH1_ORYSJ7.737e-2634.57Probable cinnamyl alcohol dehydrogenase 1 OS=Oryza... [more]
ADHA_BACSU9.458e-2439.47Probable formaldehyde dehydrogenase adhA OS=Bacill... [more]
YAHK_ECOLI2.752e-2341.18Uncharacterized zinc-type alcohol dehydrogenase-li... [more]
CADH4_ORYSJ3.594e-2333.33Putative cinnamyl alcohol dehydrogenase 4 OS=Oryza... [more]
ADHC_MYCTU3.043e-2240.00NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
ADHC_MYCBO3.043e-2240.00NADP-dependent alcohol dehydrogenase C OS=Mycobact... [more]
CADH1_ARATH8.852e-2231.18Probable cinnamyl alcohol dehydrogenase 1 OS=Arabi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188493 ID=CN188493; Name=CN188493; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTAACACCTCAGCTTGTTTTTTTTTTTTTTCAATTTA
TTAGGAGAAATTGTAAACACGGAAGCCATACATGGTTAGGCCAACGACAA
AAGCATAAAAACCAAACAAGGCACTCAAAAAACAAAACGAGTATCATGCC
AAAATTGAATTTCTCTACGGATCAAGTTTGCTTCCGGCAACGTCCACGAC
GAATCTGTACCTAACGTCGTTCTTTTCGAGTCTCTCGAATGCTTTGTTAA
CGTAATCCATCTTGATCACTTCAATCATGGAGGTGACTCCCTTCTCTCGG
CAGAATTCAAGCATTTCCTTTGTCTCCTTCATGCTCCCAATGAAGCTCCC
CGTGATTGCCTTTCTCCCAAGCATAACCATAGGGGTAAGAAACTGCATGG
GAGTGTTAATGACACCCGTCAAGATCAACTTTCCATCAAGCTTCAACAGC
GAAAGGTAAGGCTCCAGAGGGTGATTTGCGGGTACGGTATCAATGATATA
ATCAAGTGAGTCAGCGGCTTCTTGCATACGAGTTGCGTCGGAGCTGACAA
GGTACTGATCGGCACCAAGATGCTCCATAGCTTCCACTCTTTTCTTATCA
GAAGAGCTAATCACAGTAACATGGTGTCCCATCGCCTTAGCTATCAAAAC
CCCCATGTGGCCTACTCCTCCGAGCCCCAAGATTCCTCCTCTCAGCCCGC
TCTGCTTCAATCCAAAGTGGCTCAGGGGACTGAACAC
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