CN188493

Overview
NameCN188493
Unique NameCN188493
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13608 contig Csv1_Contig13608:606..1342. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188493 vs. ExPASy Swiss-Prot
Match: YL498_MIMIV (Probable zinc-type alcohol dehydrogenase-like protein L498 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L498 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.112e-15
Identity = 47/160 (29.38%), Postives = 81/160 (50.62%), Query Frame = -1 
Query:  180 AKAMGHHVTVISSSDKKRVEAMEHLGADQYLVSSDATRMQEAADSLDYIIDTVPANHPLEPYXXXXXXXXXXXLTGVINTPMQFLTPMVMLGRKA------ITGSFIGSMKETKEMLEFCREKGVTSMIEVIKMDYVNKAFERLEKNDVRYRFVVDVAGS 641
            AKAMG HV  I+ ++ K  +++ +LGA++ ++S++  +M +   S D+I+ T+P  H + PY             G        L P V+ G         +  S I    E KEML FC E  +   +++IK D +N   ++L ++  +YR+V+D+  S
Sbjct:  267 AKAMGAHVVAITRTEWKFKDSVNNLGANESILSTNVWQMNQHKGSFDFILSTIPMAHDIVPYIELLKYKATICTVGE-------LFPTVINGMDLAQHPCFLQSSLIAGSDEIKEMLAFCSEHNIMPDVQIIKADKINDTRQKLLESKAKYRYVIDIRAS 419
The following BLAST results are available for this feature:
BLAST of CN188493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
YL498_MIMIV2.112e-1529.38Probable zinc-type alcohol dehydrogenase-like prot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188493 ID=CN188493; Name=CN188493; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTAACACCTCAGCTTGTTTTTTTTTTTTTTCAATTTA
TTAGGAGAAATTGTAAACACGGAAGCCATACATGGTTAGGCCAACGACAA
AAGCATAAAAACCAAACAAGGCACTCAAAAAACAAAACGAGTATCATGCC
AAAATTGAATTTCTCTACGGATCAAGTTTGCTTCCGGCAACGTCCACGAC
GAATCTGTACCTAACGTCGTTCTTTTCGAGTCTCTCGAATGCTTTGTTAA
CGTAATCCATCTTGATCACTTCAATCATGGAGGTGACTCCCTTCTCTCGG
CAGAATTCAAGCATTTCCTTTGTCTCCTTCATGCTCCCAATGAAGCTCCC
CGTGATTGCCTTTCTCCCAAGCATAACCATAGGGGTAAGAAACTGCATGG
GAGTGTTAATGACACCCGTCAAGATCAACTTTCCATCAAGCTTCAACAGC
GAAAGGTAAGGCTCCAGAGGGTGATTTGCGGGTACGGTATCAATGATATA
ATCAAGTGAGTCAGCGGCTTCTTGCATACGAGTTGCGTCGGAGCTGACAA
GGTACTGATCGGCACCAAGATGCTCCATAGCTTCCACTCTTTTCTTATCA
GAAGAGCTAATCACAGTAACATGGTGTCCCATCGCCTTAGCTATCAAAAC
CCCCATGTGGCCTACTCCTCCGAGCCCCAAGATTCCTCCTCTCAGCCCGC
TCTGCTTCAATCCAAAGTGGCTCAGGGGACTGAACAC
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