CN188485

Overview
NameCN188485
Unique NameCN188485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK15_ARATH (SKP1-like protein 15 OS=Arabidopsis thaliana GN=ASK15 PE=2 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.647e-41
Identity = 92/166 (55.42%), Postives = 113/166 (68.07%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRA----PSGVDDDLK----AWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT-PXXXXXXXXENQWAFE 632
            +S KI L SSDGE+F+V+E VA + Q +KH++EDDC  N IPL NVT  ILS V+EYCKKHV+    DD +        DD+ K    AWD +F+K +D  T+F LILAANYLN++ LL LTCQTVAD IK KTPEE+R+ FNI+NDFT          EN WAFE
Sbjct:    2 SSNKIVLTSSDGESFQVEEVVARKLQIVKHLLEDDCVINEIPLQNVTGNILSIVLEYCKKHVDDVVDDDASEEPKKKKPDDEAKQNLDAWDAEFMKNIDMETIFKLILAANYLNVEGLLGLTCQTVADYIKDKTPEEVRELFNIENDFTHEEEEEAIRKENAWAFE 167          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_XENLA (S-phase kinase-associated protein 1 OS=Xenopus laevis GN=skp1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_RAT (S-phase kinase-associated protein 1 OS=Rattus norvegicus GN=Skp1 PE=2 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_PONAB (S-phase kinase-associated protein 1 OS=Pongo abelii GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_MOUSE (S-phase kinase-associated protein 1 OS=Mus musculus GN=Skp1 PE=1 SV=3)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_MACFA (S-phase kinase-associated protein 1 OS=Macaca fascicularis GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_HUMAN (S-phase kinase-associated protein 1 OS=Homo sapiens GN=SKP1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_CHICK (S-phase kinase-associated protein 1 OS=Gallus gallus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_CAVPO (S-phase kinase-associated protein 1 OS=Cavia porcellus GN=SKP1 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_BOVIN (S-phase kinase-associated protein 1 OS=Bos taurus GN=SKP1 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.897e-41
Identity = 90/159 (56.60%), Postives = 109/159 (68.55%), Query Frame = -3
Query:  165 ITLKSSDGEAFEVDEAVALESQTIKHMIED-----DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 620
            I L+SSDGE FEVD  +A +S TIK M+ED     +  D+ +PLPNV + IL KVI++C  H +      DD       DD+  WD +F+KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MIKGKTPEEIRKTFNIKNDFT         ENQW  E
Sbjct:    4 IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLGMDDEGDDDPVPLPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKVDQGTLFELILAANYLDIKGLLDVTCKTVANMIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWCEE 162          
The following BLAST results are available for this feature:
BLAST of CN188485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK15_ARATH2.647e-4155.42SKP1-like protein 15 OS=Arabidopsis thaliana GN=AS... [more]
SKP1_XENLA5.897e-4156.60S-phase kinase-associated protein 1 OS=Xenopus lae... [more]
SKP1_RAT5.897e-4156.60S-phase kinase-associated protein 1 OS=Rattus norv... [more]
SKP1_PONAB5.897e-4156.60S-phase kinase-associated protein 1 OS=Pongo abeli... [more]
SKP1_MOUSE5.897e-4156.60S-phase kinase-associated protein 1 OS=Mus musculu... [more]
SKP1_MACFA5.897e-4156.60S-phase kinase-associated protein 1 OS=Macaca fasc... [more]
SKP1_HUMAN5.897e-4156.60S-phase kinase-associated protein 1 OS=Homo sapien... [more]
SKP1_CHICK5.897e-4156.60S-phase kinase-associated protein 1 OS=Gallus gall... [more]
SKP1_CAVPO5.897e-4156.60S-phase kinase-associated protein 1 OS=Cavia porce... [more]
SKP1_BOVIN5.897e-4156.60S-phase kinase-associated protein 1 OS=Bos taurus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188485 ID=CN188485; Name=CN188485; organism=Citrus sinensis; type=EST; length=697bp
TTTTTTTTTTTTACAGAGAAGGTTGGGATGATATGACATTAACCCTTTAA
GTGGTTTGATGCTTTTACCAGCTAAAGACATTTGACCTCAGCAGCAACAA
CAAAAAGAAGGCAAAACAAAAAAGAAAAGACACAATTACAAATTGGTCAT
TTGAGATCCTTTCACTCAAAAGCCCACTGATTCTCCCGACGAACCTCTTC
CTCCTCTTCTGGGGTAAAGTCGTTCTTGATATTGAATGTCTTGCGGATCT
CCTCTGGAGTCTTTCCCTTAATCATGTCTGCAACAGTCTGGCAAGTTAAG
TCCAGCAAGCTCTTGATGTTCAGGTAGTTTGCCGCAAGAATAAGATCAAA
GAGAGTGGCCTGATCGACTTTGACGAAATCGGTATCCCAAGCCTTGAGAT
CATCATCGACGCCGCTGGGGGCCCGATCGTCGGACTTAGATGCCTCGACG
TGCTTCTTGCAGTACTCGATGACCTTAGAGAGGATCTTACTGGTAACGTT
AGGCAAAGGGATTCCGTTGTCGGCGCAATCGTCCTCAATCATATGCTTGA
TCGTCTGCGATTCCAACGCCACTGCTTCATCGACCTCGAACGCCTCTCCA
TCCGAGCTCTTCAGCGTGATTTTCTTACTCGTTGACATTCTGATCGATCG
ATCCAACACACTCTTGAAACCCTAACTTTCTTGATATTTATTATATT
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