CN188485

Overview
NameCN188485
Unique NameCN188485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK5_ARATH (SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK5 PE=1 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.006e-40
Identity = 89/161 (55.28%), Postives = 114/161 (70.81%), Query Frame = -3
Query:  165 SKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQAT-LFDLILAANYLNIKSLLDLTCQTV-----ADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 629
            S KI LKSSDG++FE+DE VA +S  I HM+ED CA + IPL NVTSKIL  VI+YC+KHV++ +         ++DLK WD DF+K  + T LFD+++AANYLNI+SLLDLTC+TV     AD++ GKTP+EIR  FNI+ND T         ENQWAF+
Sbjct:    2 STKIMLKSSDGKSFEIDEDVARKSIAINHMVEDGCATDVIPLRNVTSKILKIVIDYCEKHVKSKE---------EEDLKEWDADFMKTIETTILFDVMMAANYLNIQSLLDLTCKTVSDLLQADLLSGKTPDEIRAHFNIENDLTAEEVAKIREENQWAFQ 153          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1A_DICDI (SCF ubiquitin ligase complex protein SKP1a OS=Dictyostelium discoideum GN=fpaA PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 86/152 (56.58%), Postives = 112/152 (73.68%), Query Frame = -3
Query:  174 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQW 620
            + L+SSD + FE+++ +A  S TIK+MIED   +D+ IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP        EN+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDSPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK16_ARATH (SKP1-like protein 16 OS=Arabidopsis thaliana GN=ASK16 PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.822e-40
Identity = 90/171 (52.63%), Postives = 114/171 (66.67%), Query Frame = -3
Query:  150 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHV--EASKSDDRAPSGVD-------DDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE*KDLK 632
            +S KI L SSD E+FEV+EAVA + + I HMI+DDCAD  IPL NVT  IL+ VIEYCKKHV  +   SDD   +  +       ++L+ WD +F+K  D  T+  LILA NYLN++ LL LTCQTVAD +K  +PEE+R+ FNI+ND+TP        EN WAFE  DLK
Sbjct:    2 SSNKIVLTSSDDESFEVEEAVARKLKVIAHMIDDDCADKAIPLENVTGNILALVIEYCKKHVLDDVDDSDDSTEATSENVNEEAKNELRTWDAEFMKEFDMETVMKLILAVNYLNVQDLLGLTCQTVADHMKDMSPEEVRELFNIENDYTPEEEDAIRKENAWAFE--DLK 170          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1B_DICDI (SCF ubiquitin ligase complex protein SKP1b OS=Dictyostelium discoideum GN=fpaB-1 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.516e-40
Identity = 86/152 (56.58%), Postives = 111/152 (73.03%), Query Frame = -3
Query:  174 ITLKSSDGEAFEVDEAVALESQTIKHMIED-DCADNGIPLPNVTSKILSKVIEYCKKHVE--ASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQW 620
            + L+SSD + FE+++ +A  S TIK+MIED   +D  IPLPNVTS IL KV++YC+ H +  + + DD+      DD+  +D DF KVDQ TLF+LILAANYL+IK LLD+TC+TVA+MI+GKTPEEIRK FNIKNDFTP        EN+W
Sbjct:    4 VKLESSDEKVFEIEKEIACMSVTIKNMIEDIGESDAPIPLPNVTSTILEKVLDYCRHHHQHPSPQGDDKKDEKRLDDIPPYDRDFCKVDQPTLFELILAANYLDIKPLLDVTCKTVANMIRGKTPEEIRKIFNIKNDFTPEEEEQIRKENEW 155          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK19_ARATH (SKP1-like protein 19 OS=Arabidopsis thaliana GN=ASK19 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.478e-39
Identity = 92/189 (48.68%), Postives = 113/189 (59.79%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVE----------------------ASKSDDRA-PSGVDDD---------LKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            +SKKI L SSDGE+F+V+E VA + Q + H+IEDDCA N IP+PNVT +IL+KVIEYCKKHVE                        K DD A P   + D         L  WD  F+K  D  T+FD+ILAANYLN++ L DL  +T+AD IK  TPEE+R+ FNI+NDFTP        EN W FE
Sbjct:    2 SSKKIVLTSSDGESFKVEEVVARKLQIVGHIIEDDCATNKIPIPNVTGEILAKVIEYCKKHVEDDDDVVETHESSTKGDKTVEEAKKKPDDVAVPESTEGDDEAEDKKEKLNEWDAKFMKDFDIKTIFDIILAANYLNVQGLFDLCSKTIADYIKDMTPEEVRELFNIENDFTPEEEEAIRNENAWTFE 190          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK18_ARATH (SKP1-like protein 18 OS=Arabidopsis thaliana GN=ASK18 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.776e-37
Identity = 83/156 (53.21%), Postives = 101/156 (64.74%), Query Frame = -3
Query:  168 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAF 632
            +S KI L SSDGE+FE+DEAVA +   I HM+ED+CA   IPL NVT  ILSK+IEY K HV     +D        +L +WD  F+ K+D  T+F +ILAANYLN + LL    QTVAD IK KTPEE+R+ FNI+NDFTP        EN W F
Sbjct:    2 SSNKILLTSSDGESFEIDEAVARKFLIIVHMMEDNCAGEAIPLENVTGDILSKIIEYAKMHVNEPSEEDE-DEEAKKNLDSWDAKFMEKLDLETIFKIILAANYLNFEGLLGFASQTVADYIKDKTPEEVREIFNIENDFTPEEEEEIRKENAWTF 156          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK8_ARATH (SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK8 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.319e-37
Identity = 82/156 (52.56%), Postives = 107/156 (68.59%), Query Frame = -3
Query:  165 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAFE 632
            ++KKI LKSS+G+ FE++E  A + QTI HMIE +C DN I +  +TS+IL  VIEYC KH       D A    DDDL+ WD +F++ D++T+F L  AAN+LN KSLL L  QTVADMIKG TP+++R+ FNI+ND TP        EN+WAFE
Sbjct:    2 STKKIMLKSSEGKTFEIEEETARQCQTIAHMIEAECTDNVILVLKMTSEILEMVIEYCNKH-----HVDAANPCSDDDLEKWDKEFMEKDKSTIFALTNAANFLNNKSLLHLAGQTVADMIKGNTPKQMREFFNIENDLTPEEEAAIRRENKWAFE 152          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_SCHPO (Suppressor of kinetochore protein 1 OS=Schizosaccharomyces pombe GN=skp1 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = -3
Query:  171 KITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADN-GIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGV----DDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWA 623
            KI L SSD E F VD+ +A  S  IK+M+ED    N  IPLPNV+S +L KV+E+C+ H     S     S +      D+  WD  F+ VDQ  LF+++LA+NYL+IK LLD  C+TVA+MI+GK+PE+IRKTFNI NDFTP        EN+WA
Sbjct:    3 KIKLISSDNEEFVVDQLIAERSMLIKNMLEDVGEINVPIPLPNVSSNVLRKVLEWCEHHKNDLYSGTEEESDIRLKKSTDIDEWDRKFMAVDQEMLFEIVLASNYLDIKPLLDTGCKTVANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWA 158          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK17_ARATH (SKP1-like protein 17 OS=Arabidopsis thaliana GN=ASK17 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.119e-34
Identity = 76/156 (48.72%), Postives = 100/156 (64.10%), Query Frame = -3
Query:  168 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVK-VDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWAF 632
            +SKKI L SSD E FE+DEAVA + Q + HMI+DDCAD  I L NVT KIL+ +IEYCKKHV+  ++         ++   WD +FVK +D  TLF L+ AA+YL +  L +L  Q +AD    KT  EIR+ FNI+ND+TP        +N+WAF
Sbjct:    2 SSKKIVLTSSDDECFEIDEAVARKMQMVAHMIDDDCADKAIRLQNVTGKILAIIIEYCKKHVDDVEA--------KNEFVTWDAEFVKNIDMDTLFKLLDAADYLIVIGLKNLIAQAIADYTADKTVNEIRELFNIENDYTPEEEEELRKKNEWAF 149          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK7_ARATH (SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.725e-28
Identity = 67/121 (55.37%), Postives = 84/121 (69.42%), Query Frame = -3
Query:  270 TSKKITLKSSDGEAFEVDEAVALESQTIKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 632
            ++KKI LKSSDG+ FE++E  A + QTI HMIE +C DN IP+ NVTS+IL  VIEYC KH       D A    D+DLK WD +F++ DQ T+F L+ AA  L+IKSLL L  QTVADM+
Sbjct:    2 STKKIMLKSSDGKMFEIEEETARQCQTIAHMIEAECTDNVIPVSNVTSEILEMVIEYCNKH-----HVDAANPCSDEDLKKWDKEFMEKDQYTIFHLMNAAYDLHIKSLLALAYQTVADMV 117          
The following BLAST results are available for this feature:
BLAST of CN188485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
ASK5_ARATH1.006e-4055.28SKP1-like protein 5 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1A_DICDI3.822e-4056.58SCF ubiquitin ligase complex protein SKP1a OS=Dict... [more]
ASK16_ARATH3.822e-4052.63SKP1-like protein 16 OS=Arabidopsis thaliana GN=AS... [more]
SKP1B_DICDI8.516e-4056.58SCF ubiquitin ligase complex protein SKP1b OS=Dict... [more]
ASK19_ARATH2.478e-3948.68SKP1-like protein 19 OS=Arabidopsis thaliana GN=AS... [more]
ASK18_ARATH1.776e-3753.21SKP1-like protein 18 OS=Arabidopsis thaliana GN=AS... [more]
ASK8_ARATH2.319e-3752.56SKP1-like protein 8 OS=Arabidopsis thaliana GN=ASK... [more]
SKP1_SCHPO9.119e-3450.00Suppressor of kinetochore protein 1 OS=Schizosacch... [more]
ASK17_ARATH9.119e-3448.72SKP1-like protein 17 OS=Arabidopsis thaliana GN=AS... [more]
ASK7_ARATH5.725e-2855.37SKP1-like protein 7 OS=Arabidopsis thaliana GN=ASK... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188485 ID=CN188485; Name=CN188485; organism=Citrus sinensis; type=EST; length=697bp
TTTTTTTTTTTTACAGAGAAGGTTGGGATGATATGACATTAACCCTTTAA
GTGGTTTGATGCTTTTACCAGCTAAAGACATTTGACCTCAGCAGCAACAA
CAAAAAGAAGGCAAAACAAAAAAGAAAAGACACAATTACAAATTGGTCAT
TTGAGATCCTTTCACTCAAAAGCCCACTGATTCTCCCGACGAACCTCTTC
CTCCTCTTCTGGGGTAAAGTCGTTCTTGATATTGAATGTCTTGCGGATCT
CCTCTGGAGTCTTTCCCTTAATCATGTCTGCAACAGTCTGGCAAGTTAAG
TCCAGCAAGCTCTTGATGTTCAGGTAGTTTGCCGCAAGAATAAGATCAAA
GAGAGTGGCCTGATCGACTTTGACGAAATCGGTATCCCAAGCCTTGAGAT
CATCATCGACGCCGCTGGGGGCCCGATCGTCGGACTTAGATGCCTCGACG
TGCTTCTTGCAGTACTCGATGACCTTAGAGAGGATCTTACTGGTAACGTT
AGGCAAAGGGATTCCGTTGTCGGCGCAATCGTCCTCAATCATATGCTTGA
TCGTCTGCGATTCCAACGCCACTGCTTCATCGACCTCGAACGCCTCTCCA
TCCGAGCTCTTCAGCGTGATTTTCTTACTCGTTGACATTCTGATCGATCG
ATCCAACACACTCTTGAAACCCTAACTTTCTTGATATTTATTATATT
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