CN188485

Overview
NameCN188485
Unique NameCN188485
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length697
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: SKP1_YEAST (Suppressor of kinetochore protein 1 OS=Saccharomyces cerevisiae GN=SKP1 PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 1.275e-27
Identity = 75/194 (38.66%), Postives = 103/194 (53.09%), Query Frame = -3
Query:  171 SKKITLKSSDGEAFEVDEAVALESQTIKHMI---------------------------------EDDCADNGI--PLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLK------AWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFTPXXXXXXXXENQWA 629
            +  + L S +GE F VD+ +A  S  +K+ +                                 +DD  D+ I  P+PNV S +L KVIE+ + H      D   P   DDD +      +WD +F+KVDQ  L+++ILAANYLNIK LLD  C+ VA+MI+G++PEEIR+TFNI NDFTP        EN+WA
Sbjct:    3 TSNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMHDSNLQNNSDSESDSDSETNHKSKDNNNGDDDDEDDDEIVMPVPNVRSSVLQKVIEWAEHH-----RDSNFPDEDDDDSRKSAPVDSWDREFLKVDQEMLYEIILAANYLNIKPLLDAGCKVVAEMIRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWA 191          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK6_ARATH (SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.117e-23
Identity = 57/87 (65.52%), Postives = 68/87 (78.16%), Query Frame = -3
Query:  294 IKHMIEDDCADNGIPLPNVTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFV-KVDQATLFDLILAANYLNIKSLLDLT 551
            IK M EDDCADNGIPLPNVTSKIL  VIEYCKKHV  SK         ++DLK WD +F+ K++Q+ LFD+++AANYLNI+SLLDLT
Sbjct:    3 IKGMAEDDCADNGIPLPNVTSKILLLVIEYCKKHVVESK---------EEDLKKWDAEFMKKMEQSILFDVMMAANYLNIQSLLDLT 80          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK21_ARATH (SKP1-like protein 21 OS=Arabidopsis thaliana GN=ASK21 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.977e-12
Identity = 46/141 (32.62%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  213 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCADN---GIPLPN-VTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 620
            I L+++DG   +V++ VA+    I + +I+     +    I LP  V   +LS + +YC+ H        + P   + + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GKTPEEIR+ F++ +D T
Sbjct:   18 IWLETADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNYAISLPQRVNPAMLSLIFDYCRFH--------QVPGRSNKERKVYDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIREIFHLPDDLT 150          
BLAST of CN188485 vs. ExPASy Swiss-Prot
Match: ASK20_ARATH (SKP1-like protein 20 OS=Arabidopsis thaliana GN=ASK20 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.674e-11
Identity = 44/141 (31.21%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  213 ITLKSSDGEAFEVDEAVALESQTI-KHMIEDDCA---DNGIPLPN-VTSKILSKVIEYCKKHVEASKSDDRAPSGVDDDLKAWDTDFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMIKGKTPEEIRKTFNIKNDFT 620
            I L+++DG   +V++ VA+    I + +I+       ++ I LP  V   + S +++YC+ H        + P   + + K +D  F+++D   L +L  AA+ L +K L+DLT + +A +I+GK PEEIR+ F++ +D T
Sbjct:   18 IWLQTADGSIQQVEQEVAMFCPMICQEVIQKGVGSSKNHAISLPQRVNPAMFSLILDYCRFH--------QLPGRSNKERKTYDERFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKNPEEIREIFHLPDDLT 150          
The following BLAST results are available for this feature:
BLAST of CN188485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
SKP1_YEAST1.275e-2738.66Suppressor of kinetochore protein 1 OS=Saccharomyc... [more]
ASK6_ARATH1.117e-2365.52SKP1-like protein 6 OS=Arabidopsis thaliana GN=ASK... [more]
ASK21_ARATH1.977e-1232.62SKP1-like protein 21 OS=Arabidopsis thaliana GN=AS... [more]
ASK20_ARATH1.674e-1131.21SKP1-like protein 20 OS=Arabidopsis thaliana GN=AS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188485 ID=CN188485; Name=CN188485; organism=Citrus sinensis; type=EST; length=697bp
TTTTTTTTTTTTACAGAGAAGGTTGGGATGATATGACATTAACCCTTTAA
GTGGTTTGATGCTTTTACCAGCTAAAGACATTTGACCTCAGCAGCAACAA
CAAAAAGAAGGCAAAACAAAAAAGAAAAGACACAATTACAAATTGGTCAT
TTGAGATCCTTTCACTCAAAAGCCCACTGATTCTCCCGACGAACCTCTTC
CTCCTCTTCTGGGGTAAAGTCGTTCTTGATATTGAATGTCTTGCGGATCT
CCTCTGGAGTCTTTCCCTTAATCATGTCTGCAACAGTCTGGCAAGTTAAG
TCCAGCAAGCTCTTGATGTTCAGGTAGTTTGCCGCAAGAATAAGATCAAA
GAGAGTGGCCTGATCGACTTTGACGAAATCGGTATCCCAAGCCTTGAGAT
CATCATCGACGCCGCTGGGGGCCCGATCGTCGGACTTAGATGCCTCGACG
TGCTTCTTGCAGTACTCGATGACCTTAGAGAGGATCTTACTGGTAACGTT
AGGCAAAGGGATTCCGTTGTCGGCGCAATCGTCCTCAATCATATGCTTGA
TCGTCTGCGATTCCAACGCCACTGCTTCATCGACCTCGAACGCCTCTCCA
TCCGAGCTCTTCAGCGTGATTTTCTTACTCGTTGACATTCTGATCGATCG
ATCCAACACACTCTTGAAACCCTAACTTTCTTGATATTTATTATATT
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