CN188475

Overview
NameCN188475
Unique NameCN188475
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length520
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2589 contig Csv1_Contig2589:398..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: RC23_ARATH (UPF0057 membrane protein At4g30650 OS=Arabidopsis thaliana GN=At4g30650 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.685e-11
Identity = 36/56 (64.29%), Postives = 42/56 (75.00%), Query Frame = -2 
Query:  178 MADGSTATCVDILLAVILPPLGVCLKFGR-KAEFWICLLLTILGYIPGIIYAVYAI 342
            MA      C +IL+A++LPPLGVCLK G    EF ICL+LTILGYIPGIIYA+Y I
Sbjct:    1 MASNMEVFC-EILIAILLPPLGVCLKRGCCTVEFLICLVLTILGYIPGIIYALYVI 55
[Close]
BLAST of CN188475 vs. ExPASy Swiss-Prot
Match: RC21_ARATH (UPF0057 membrane protein At1g57550 OS=Arabidopsis thaliana GN=At1g57550 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.580e-11
Identity = 25/48 (52.08%), Postives = 39/48 (81.25%), Query Frame = -2 
Query:  172 VDILLAVILPPLGVCLKFGRKAEFWICLLLTILGYIPGIIYAVYAITK 315
            +++L A+ +PP+GV L++G   EFW+CLLLT+  +IPG+IYA+Y +TK
Sbjct:    5 LEVLCAIFIPPVGVFLRYGLGLEFWVCLLLTLFAFIPGLIYAIYVLTK 52
The following BLAST results are available for this feature:
BLAST of CN188475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RC23_ARATH2.685e-1164.29UPF0057 membrane protein At4g30650 OS=Arabidopsis ... [more]
RC21_ARATH4.580e-1152.08UPF0057 membrane protein At1g57550 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006C01_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006C01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188475 ID=CN188475; Name=CN188475; organism=Citrus sinensis; type=EST; length=520bp
ACGAAACAAGTGCGTCTCTCCCACACACCCTTACACCCCAGGTTGATTAA
GAATCACAACCCATCTGGCTACATCAAATCAGAGCTGTCCATCAAACGGT
TGTAAATAAAAGATCTCATAAACACATGATGCCCTTGGGATCGGTCAATA
GATGAAGAACAGAGATCACTTCTTGGTGATGGCATAAACAGCATAAATAA
TTCCAGGGATATACCCCAGAATTGTCAAGAGCAAACAGATCCAAAACTCA
GCCTTGCGACCAAATTTGAGACAGACACCAAGAGGAGGCAAGATAACAGC
CAAGAGAATATCTACGCATGTTGCTGTGCTTCCATCTGCCATCTTTGATT
GATTCTTAGGAGGTGTAAAATGGAATAAAATAAAATTTAGAGTCGAAAAA
CAAGAACTTTGATTAAAAAAGTGTTTAAGACGGTCTTCACTGCTCTGGGT
TCTGATGGGGGAGTGAAGCTGTACTGGGGAATTGCAGCCGATGGATCTGT
GGTCATATCTGATGACTTGG
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