CX300694

Overview
NameCX300694
Unique NameCX300694
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEE4 (3-ketoacyl-CoA thiolase OS=Pseudomonas entomophila (strain L48) GN=fadA PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVATMCVGLGQGITTVFER 390
[Close]
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVSTMCVGLGQGITTVFER 390
[Close]
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVSTMCVGLGQGITTVFER 390
[Close]
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVSTMCVGLGQGITTVFER 390
[Close]
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            EK+N++GGA+A+GHP G +GAR   TLL+ MK+ G     GV +MC+G G G   VFER
Sbjct:  334 EKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TLGVSTMCVGLGQGITTVFER 390
[Close]
BLAST of CX300694 vs. ExPASy Swiss-Prot
Match: FADA_HAHCH (3-ketoacyl-CoA thiolase OS=Hahella chejuensis (strain KCTC 2396) GN=fadA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 9.867e-11
Identity = 32/59 (54.24%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:    1 EKINVNGGALAIGHPLGTTGARCVATLLHEMKRRGRDCRFGVISMCIGTGMGAAAVFER 177
            +K+N+NGGA+A+GHPLG +GAR   TLL+ M  +G     GV +MCIG G G A V+ER
Sbjct:  334 QKVNLNGGAIALGHPLGCSGARISTTLLNVMAAKGG--TLGVSTMCIGLGQGIATVWER 390
The following BLAST results are available for this feature:
BLAST of CX300694 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 106
Match NameE-valueIdentityDescription
FADA_PSEE47.555e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas entomophila... [more]
FADA_PSEMY9.867e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
FADA_PSEAE9.867e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB9.867e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA79.867e-1152.543-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_HAHCH9.867e-1154.243-ketoacyl-CoA thiolase OS=Hahella chejuensis (str... [more]

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Properties
Property NameValue
Genbank descriptionC08001C02SK PhyRootSw1 Citrus sinensis cDNA clone C08001C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300694 ID=CX300694; Name=CX300694; organism=Citrus sinensis; type=EST; length=464bp
GAAAAGATCAATGTGAATGGAGGTGCACTTGCCATTGGGCATCCTCTGGG
CACAACAGGTGCACGCTGTGTTGCAACTCTATTGCATGAGATGAAGAGGC
GAGGCAGAGACTGCCGCTTTGGAGTGATATCAATGTGCATAGGCACAGGA
ATGGGGGCAGCAGCTGTTTTCGAAAGAGGTGACTGTGCCGATGAGCTTTG
CAATGTCAGGAAAGTGGAAAGCAACAATTTCTTATCTAAGGATGTTCTGT
AGATTACCATTTGTCTGCTGCAGCATGTTCTTGTGGAACGATCATATTGT
GTTTGGAATCCGAGTATTTTTAATGAACAGTTATATGTAATAAGATTGCT
TTGTTGTGATCACAAAGCCGACCACAGGTCACACAGCTGTCTGTATCTTC
GGTTTTGATATGATTAATTTAAATATCGTCACACTTTATGAATGCCAAAA
AAAAAAAAAAAAAA
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