CN188471

Overview
NameCN188471
Unique NameCN188471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.380e-48
Identity = 98/190 (51.58%), Postives = 126/190 (66.32%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q VY+NGS+YSPEVLD++ED L  +F  GV  + ++ L I YPT+A+ PH  +N YK V+A+A+ T+YSFP ADKVK +LADPS F                             ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASVCLQIGYPTVASVPHSVVNGYKRVLALAVETDYSFPLADKVKAFLADPSAF-VVAAPVAETAAAPAASAAPAKEEKEESEESDDDMGFGLFD 315          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.380e-48
Identity = 100/193 (51.81%), Postives = 126/193 (65.28%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLG---IRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L    I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F  GV  + ++ L I YPTLA+ PH  IN YK V+AV + T+Y+FP A+KVK YLADP+ F                             ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASVCLQIGYPTLASIPHTIINGYKRVLAVTVETDYTFPLAEKVKAYLADPTAFAVAAPVAAATEQKSAAPAAKEEAPKEDSEESDEDMGFGLFD 319          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.036e-46
Identity = 95/191 (49.74%), Postives = 126/191 (65.97%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F  GV  V ++ L I YPT+A+ PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                              ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 184.111 bits (466), Expect = 6.577e-46
Identity = 95/192 (49.48%), Postives = 126/192 (65.62%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F  GV  V ++ L I YPT+A+ PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                               ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAAPAAAPAATTAAPAKVEAKEESEESDEDMGFGLFD 318          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.590e-46
Identity = 95/191 (49.74%), Postives = 125/191 (65.45%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+YSPEVLD++E  L  +F  GV  V ++ L I YPT+A+ PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                              ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFAAAAPVAAATTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.590e-46
Identity = 94/192 (48.96%), Postives = 126/192 (65.62%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E+ L  +F  GV  V ++ L I YPT+A+ PH  IN YK V+A+++ T+Y+FP A+KVK +LADPS F                               ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAAAPVAAATTAAPAAAAAAPAKVEAKEESEESDEDMGFGLFD 318          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.465e-45
Identity = 92/191 (48.17%), Postives = 122/191 (63.87%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL+V  VY++GS++SPE+LD+  +DL  KF  GV+ + A+ L++ YPT+A+APH   N +KN++A+A  TE  F +A  +KEY+ DPSKF                              E D DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFKNLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEEEDDDMGFGLFD 317          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 1.914e-45
Identity = 94/191 (49.21%), Postives = 124/191 (64.92%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E  L  +F  GV  V ++ L I YPT+A+ PH  IN YK V+A+++ TEY+FP  +KVK +LADPS F                              ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETEYTFPLTEKVKAFLADPSAFAAAAPAAAATTAAPAAAAAPAKAEAKEESEESDEDMGFGLFD 317          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.568e-45
Identity = 92/191 (48.17%), Postives = 123/191 (64.40%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L+IPTKI+KGT+EII  V +++ GDKVG+SEA LL  L I PFSYGL +  VY++GS++SPE+LD+  +DL  KF +GV+ + A++L I YPT+A+APH   N +KN++A+A +TE  F QA  +KE++ DPSKF                              E D DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYGLAITQVYDSGSIFSPEILDIKPEDLRAKFQAGVANLAAVSLQIGYPTIASAPHSIANGFKNLLAIAASTEVEFKQAATIKEFIKDPSKFVAAAAASAPAAGAGAAAEKKEEAKKEESESEEDDDMGFGLFD 317          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.116e-44
Identity = 93/191 (48.69%), Postives = 123/191 (64.40%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD +E+ L  +F  GV  V ++ L   YPT+A+ PH  IN YK V+A+++ T+Y+FP A+ VK +LADPS F                              ESD DMGF LFD
Sbjct:  127 NTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASVCLQTGYPTVASVPHSIINGYKRVLALSVETDYTFPLAENVKAFLADPSAFVAAAPVAADTTAAPAAAAAPAKVEAKEESEESDEDMGFGLFD 317          
The following BLAST results are available for this feature:
BLAST of CN188471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RLA0_RANSY5.380e-4851.5860S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_DANRE5.380e-4851.8160S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]
RLA0_HUMAN5.036e-4649.7460S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN6.577e-4649.4860S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_RAT8.590e-4649.7460S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_PIG8.590e-4648.9660S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_DROME1.465e-4548.1760S acidic ribosomal protein P0 OS=Drosophila mela... [more]
RLA0_MOUSE1.914e-4549.2160S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_CERCA5.568e-4548.1760S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0L_HUMAN2.116e-4448.6960S acidic ribosomal protein P0-like OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006B22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188471 ID=CN188471; Name=CN188471; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTTTTTTTTTTTATTGGCCTAAATAAAGGATTATACCTATAAAAA
GGAAACTGAGTCTACAAAAAGCATTAAGAAACTTAAGCAAACAAAACCAA
AAACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTG
CACTTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAG
GCTCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCA
CCGCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAG
GTACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAG
CAACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCT
GCCAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATAC
ACCTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCT
CTGGGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCA
TAAGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGA
TCCCACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAA
CAGTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAG
GTCTGGGAGGGGTCGAGACCTGTGTTGC
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