CN188471

Overview
NameCN188471
Unique NameCN188471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 177.948 bits (450), Expect = 4.713e-44
Identity = 90/190 (47.37%), Postives = 127/190 (66.84%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTG+ P +TSFFQ L IPTKI +GT+EI+  V LI++GDKVG+SE+ALL  LG+ PFSYGLVV+ VY++G++Y+PEVLD++ ++L ++F SGV  V +++LA++YPTLA+  H   N  +N++ VA  T+ SF +A+ +K ++ADPSKF                             ESD DMGF LFD
Sbjct:  127 NTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVTDVSFKEAETIKAFIADPSKF----AAAAPAAAAAPAAAAPAAKKEEPKEESDDDMGFGLFD 312          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.516e-42
Identity = 89/190 (46.84%), Postives = 121/190 (63.68%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTG++P +TSFFQ L IPTKI +GT+EI + V L+ K  KVG SEA LL  L I PF+YG+ V ++Y+ G+V+SPE+LD+SE+DL+    S  S++TA++L  +YPT+ +  H  +NAYKN+VAV+LATEY+F   ++ K +LADPS F                             ESD DMGF LFD
Sbjct:  125 NTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLATEYTFEGTEQTKAFLADPSAF--VVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMGFGLFD 312          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.959e-38
Identity = 82/189 (43.39%), Postives = 116/189 (61.38%), Query Frame = -3
Query:  157 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 723
            TG+DP  T FFQ L I TKI KG +EI   V+LIR+G++V +S A LL KL ++PF+YGL V+ VY+NGSVYS  VLD++++ ++E FA+G + V A++ A+  P+ AAAPH  + A++N  A+ L T + FPQ  ++KE + +P+ F                             E DGDMGFSLFD
Sbjct:  127 TGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAVSRAVGLPSAAAAPHSILEAFRNCAALCLDTPFCFPQMQRLKEMVENPAAF-AAAAAPAAAAPAAAPAAAAKAPEPEEEEEEDGDMGFSLFD 314          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.610e-38
Identity = 78/190 (41.05%), Postives = 118/190 (62.11%), Query Frame = -3
Query:  157 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 726
            NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++GL V  VY+NG V+   +LD+++++LV  F S VS + +++LAI YPTL +  H  IN YK+++AVA+A  Y +P+ + + + + +P K+                             ESD DMGF LFD
Sbjct:  125 NTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKY--AAAAPAATSAASGDAAPAEEAAAEEEEESDDDMGFGLFD 312          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.243e-36
Identity = 67/149 (44.97%), Postives = 110/149 (73.83%), Query Frame = -3
Query:  280 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 726
            NTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +  +VLD+SE+ L++ F++ ++ + +L+LA+++PTL +  H  +NAYK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  125 NTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASLSLALNFPTLPSVIHSVVNAYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.624e-36
Identity = 67/149 (44.97%), Postives = 109/149 (73.15%), Query Frame = -3
Query:  280 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKF 726
            NTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +   VLD+SE+ L++ F+S ++ + A++LA+++PTL +  H  +N+YK V+AVA+ TE S+P+ +++K+ +A+P  +
Sbjct:  125 NTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAVSLALNFPTLPSVIHSLVNSYKKVLAVAIETEISWPEIEELKDRIANPEAY 273          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.985e-34
Identity = 68/143 (47.55%), Postives = 101/143 (70.63%), Query Frame = -3
Query:  295 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 723
            TG++P+QTSF Q L I TKIN+G ++I+  V +I+ G KVG+SEA LL KL I+PF+YGL  + +Y+ G+ YSP +   SE+DL+ KF  G+  + A++L I YPT+A+ PH  +NA+KN++A++  T Y+F  A+K K   A
Sbjct:  127 TGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAISLEIGYPTVASIPHSVMNAFKNLLAISFETSYTFDAAEKFKSAAA 266          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.089e-32
Identity = 75/189 (39.68%), Postives = 114/189 (60.32%), Query Frame = -3
Query:  157 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDGDMGFSLFD 723
            TG+DPS TSF + L I TKI KG +EI   V LI++G+KV +S A LL K  + P SYG+ V++VY++G +Y  +VLD++++D++EKF+ GVS V AL+ A    T A+ PH+F+ A+KN+VA+ + ++Y+FP    +K+++ +P  F                             E DG MGF +FD
Sbjct:  129 TGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLRKFNMNP-SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAALSRATGVITEASYPHVFVEAFKNIVALIIDSDYTFPLMKILKKWVENPEAFAAVAAPASAAKADEPKKEEAKKVEEEEEEEEDGFMGFGMFD 316          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 66/138 (47.83%), Postives = 94/138 (68.12%), Query Frame = -3
Query:  316 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQAD 726
            NTG++P  TSFFQ LNI TKI KGTVEI++  +++  GD+V +S A LL KL I PF Y + VQSV++ G ++  E L ++ DD+VEK+   G+S V AL+L    PT A  PHM ++A+K ++  ++ATEY F + D
Sbjct:  134 NTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSIT-DDVVEKYLLEGISNVAALSLGAGIPTAATLPHMIMDAFKTLLGASVATEYEFDEFD 270          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_LEIIN (60S acidic ribosomal protein P0 OS=Leishmania infantum GN=LIPO-A PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 61/135 (45.19%), Postives = 91/135 (67.41%), Query Frame = -3
Query:  322 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 726
            +TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +    G+S V A+AL    PT +    M ++A+KN++AV++AT Y F +
Sbjct:  134 STGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 268          
The following BLAST results are available for this feature:
BLAST of CN188471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RLA0_CAEEL4.713e-4447.3760S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_SCHPO1.516e-4246.8460S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_EIMTE2.959e-3843.3960S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_YEAST8.610e-3841.0560S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_NEUCR1.243e-3644.9760S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN1.624e-3644.9760S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_DICDI1.985e-3447.5560S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_PLAF81.089e-3239.6860S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_TRYCR1.246e-2847.8360S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEIIN3.394e-2645.1960S acidic ribosomal protein P0 OS=Leishmania infa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006B22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188471 ID=CN188471; Name=CN188471; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTTTTTTTTTTTATTGGCCTAAATAAAGGATTATACCTATAAAAA
GGAAACTGAGTCTACAAAAAGCATTAAGAAACTTAAGCAAACAAAACCAA
AAACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTG
CACTTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAG
GCTCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCA
CCGCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAG
GTACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAG
CAACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCT
GCCAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATAC
ACCTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCT
CTGGGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCA
TAAGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGA
TCCCACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAA
CAGTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAG
GTCTGGGAGGGGTCGAGACCTGTGTTGC
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