CN188471

Overview
NameCN188471
Unique NameCN188471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.394e-26
Identity = 61/135 (45.19%), Postives = 91/135 (67.41%), Query Frame = -3
Query:  322 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 726
            +TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +    G+S V A+AL    PT +    M ++A+KN++AV++AT Y F +
Sbjct:  133 STGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAMALGAGIPTSSTIGPMLVDAFKNLLAVSVATSYEFEE 267          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_ENCCU (60S acidic ribosomal protein P0 OS=Encephalitozoon cuniculi GN=RPP0 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 53/138 (38.41%), Postives = 86/138 (62.32%), Query Frame = -3
Query:  310 TGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKV 723
            TG+ P +TS+FQ L I TKI KG VEII+P +++ +GDKVG S+A LL  L I+PF Y + +  +YE+G +Y   ++D+ E+D+     + +S V A +L     T A+ P+   NA+K+++ V+L  ++   +   V
Sbjct:  150 TGMTPDKTSYFQALGIATKITKGKVEIISPYKVLSEGDKVGPSQANLLGMLNIKPFCYKMTMHQIYEDGVIYDSSLIDIGEEDIFTSLRNAISTVAAASLGAGVITQASMPYNVRNAFKDILHVSLGADFMIKEQSMV 287          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_METJA (Acidic ribosomal protein P0 homolog OS=Methanocaldococcus jannaschii GN=rplP0 PE=3 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 45/145 (31.03%), Postives = 74/145 (51.03%), Query Frame = -3
Query:  295 NTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQADKVKEYLA 726
            +TG+ P       + + IP  I KG + I     +++KG+ V    AA+L +LGI+P   GL + +VYE+G +Y+P+VL + E+ L+    +       LA   +YP     P +   A+ N  A AL+ E +F   +   + LA
Sbjct:  132 STGMPPGPFLGELKSVGIPAAIEKGKIAIKEDKVVVKKGEVVSPKLAAVLDRLGIKPIKVGLNILAVYEDGIIYTPDVLKVDEEKLLADIQAAYQNAFNLAFNTAYPAKEVLPFLIQKAFIN--ARALSVETAFVTKETAGDILA 274          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_METVO (Acidic ribosomal protein P0 homolog (Fragment) OS=Methanococcus voltae GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 42/128 (32.81%), Postives = 67/128 (52.34%), Query Frame = -3
Query:  346 NTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVAL 726
            +TG+ P    S  + + +P  I KG + I     + ++GD V +  A +L+KL I+P   GL V  VYE+G VY PE+L + ED+ + K  S  +    L++    PT A    +   A+ N  AV++
Sbjct:  133 STGMPPGPFLSELKAVGLPAAIEKGKIGIKEDTIVAKEGDVVSAKLAVVLSKLDIKPMEVGLNVLGVYEDGIVYDPEILKIDEDEFLAKLQSAYTGAFNLSVNAVIPTSATIETIVQKAFSNAKAVSI 260          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_PYRHO (Acidic ribosomal protein P0 homolog OS=Pyrococcus horikoshii GN=rplP0 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.643e-12
Identity = 40/119 (33.61%), Postives = 61/119 (51.26%), Query Frame = -3
Query:  334 QVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 690
            Q L IP +I KG V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++           LA+ I+YPT      +   A+ N   VA+   Y
Sbjct:  141 QALGIPARIEKGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMLQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKTVAIEAGY 259          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.115e-12
Identity = 39/119 (32.77%), Postives = 62/119 (52.10%), Query Frame = -3
Query:  334 QVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 690
            Q + IP +I +G V I     +++ G+ +    A +L  LGI+P   GL V +VYE+G VY+P+VL + E + ++           LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  141 QAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYIDMVQKAYMHAFNLAVNIAYPTPETIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_PYRFU (Acidic ribosomal protein P0 homolog OS=Pyrococcus furiosus GN=rplP0 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.808e-11
Identity = 37/119 (31.09%), Postives = 62/119 (52.10%), Query Frame = -3
Query:  334 QVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEY 690
            Q + IP +I +G V I     +++ G+++    A +L  LGI+P   GL + +VYE+G +Y+P+VL + E + +            LA+ I+YPT      +   A+ N  AVA+   Y
Sbjct:  141 QAMGIPARIERGKVTIQKDTVVLKAGEEITPELANILNALGIQPLEVGLDLLAVYEDGIIYTPDVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNAKAVAVEAGY 259          
BLAST of CN188471 vs. ExPASy Swiss-Prot
Match: RLA0_THEON (Acidic ribosomal protein P0 homolog OS=Thermococcus onnurineus (strain NA1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.869e-11
Identity = 38/123 (30.89%), Postives = 59/123 (47.97%), Query Frame = -3
Query:  322 QVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASGVSMVTALALAISYPTLAAAPHMFINAYKNVVAVALATEYSFPQ 690
            Q L IP +I KG V I     +++ G+ +    A +L  LGI P   GL + + YE+G VY+PEVL + E++ +            L++  +YPT      +   AY     VA+   Y  P+
Sbjct:  140 QALGIPARIEKGKVSIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDGIVYTPEVLAIDEEEYINLLQQAYMHAFNLSVNTAYPTSQTIEAIIQKAYLGAKNVAVEAGYITPE 262          
The following BLAST results are available for this feature:
BLAST of CN188471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
RLA0_LEICH3.394e-2645.1960S acidic ribosomal protein P0 OS=Leishmania chag... [more]
RLA0_ENCCU4.900e-2538.4160S acidic ribosomal protein P0 OS=Encephalitozoon... [more]
RLA0_METJA1.635e-1231.03Acidic ribosomal protein P0 homolog OS=Methanocald... [more]
RLA0_METVO2.135e-1232.81Acidic ribosomal protein P0 homolog (Fragment) OS=... [more]
RLA0_PYRHO3.643e-1233.61Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRAB8.115e-1232.77Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_PYRFU1.808e-1131.09Acidic ribosomal protein P0 homolog OS=Pyrococcus ... [more]
RLA0_THEON6.869e-1130.89Acidic ribosomal protein P0 homolog OS=Thermococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0006B22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0006B22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188471 ID=CN188471; Name=CN188471; organism=Citrus sinensis; type=EST; length=728bp
TTTTTTTTTTTTTTTTTATTGGCCTAAATAAAGGATTATACCTATAAAAA
GGAAACTGAGTCTACAAAAAGCATTAAGAAACTTAAGCAAACAAAACCAA
AAACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACAGTG
CACTTAGTCGAACAAGCTGAAGCCCATATCTCCATCAGACTCCTCAGCAG
GCTCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCACCA
CCGCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGCCAG
GTACTCCTTCACTTTGTCAGCCTGAGGGAATGAATACTCAGTTGCAAGAG
CAACAGCAACCACATTCTTGTATGCATTGATGAACATGTGTGGAGCAGCT
GCCAGGGTTGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGATAC
ACCTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGACCT
CTGGGCTGTAGACAGAACCGTTTTCATAGACAGACTGGACAACAAGACCA
TAAGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGAAGA
TCCCACCTTGTCACCCTTCCTGATAAGCTCCACAGGTGTGATAATTTCAA
CAGTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAGGAG
GTCTGGGAGGGGTCGAGACCTGTGTTGC
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