CX675771

Overview
NameCX675771
Unique NameCX675771
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length729
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = -1
Query:  193 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 483
            MA YK+ L+ P+G E   +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +++EEEL
Sbjct:    1 MATYKVTLVRPDGSETTIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.872e-32
Identity = 73/150 (48.67%), Postives = 101/150 (67.33%), Query Frame = -1
Query:  193 MSTVTLSAPCMVKAAPRNQLSRNLIKSPSSLGSVKGISKTFGLKCSPNFQAS-MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 639
            +ST+++SA  + K  P    S      P+++G        FGLK     + + MA YK+ LI        F+  +D Y+LD AEE G+DLPYSCRAG+CS+CAGK+V+GSVDQSD SFLDD+Q+EAG++LTC +YP++D  I++HKEEEL
Sbjct:    5 LSTLSVSASLLPKQQPMVASSL-----PTNMGQA-----LFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_SPIPL (Ferredoxin OS=Spirulina platensis PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.445e-32
Identity = 64/98 (65.31%), Postives = 79/98 (80.61%), Query Frame = -1
Query:  193 MAVYKIKLIGP-NGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 483
            MA YK+ LI    G     +  +D YILDAAEEAG+DLPYSCRAGACSTCAG + SG++DQSD SFLDD+Q+EAGY+LTC++YPTSDC I++H+EE L
Sbjct:    1 MATYKVTLINEAEGINETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEEGL 98          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_SCEQU (Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.445e-32
Identity = 63/96 (65.62%), Postives = 81/96 (84.38%), Query Frame = -1
Query:  193 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 480
            A YK+ L  P+G++   E  +D YILDAAEEAG+DLPYSCRAGACS+CAGK+ +G+VDQSD SFLDD+QM+ G++LTC++YPTSDC I +HKEE+L
Sbjct:    1 ATYKVTLKTPSGDQ-TIECPDDTYILDAAEEAGLDLPYSCRAGACSSCAGKVEAGTVDQSDQSFLDDSQMDGGFVLTCVAYPTSDCTIATHKEEDL 95          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_SAMNI (Ferredoxin OS=Sambucus nigra PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.194e-32
Identity = 64/96 (66.67%), Postives = 81/96 (84.38%), Query Frame = -1
Query:  193 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 480
            A YK+KLI P+G + EFE  +D YIL+ AEE G+D+PYSCRAG+CS+CAGKLV+GSVDQSD SFLDD Q+E G++LTC++YP SD  I++HKEEEL
Sbjct:    1 ASYKVKLITPDGPQ-EFECPDDVYILEHAEELGIDIPYSCRAGSCSSCAGKLVAGSVDQSDQSFLDDEQIEEGWVLTCVAYPKSDVTIETHKEEEL 95          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_SYNLI (Ferredoxin OS=Synechococcus lividus PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32
Identity = 63/97 (64.95%), Postives = 79/97 (81.44%), Query Frame = -1
Query:  193 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 483
            MA YK+ L+ P+GE    +  ED+YILD AEE G+DLP+SCRAGACSTCAGKL+ G VDQSD SFLDD+Q+E G++LTC++YP SDC I +H+EEEL
Sbjct:    1 MATYKVTLVRPDGET-TIDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTHQEEEL 96          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_GUITH (Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32
Identity = 64/97 (65.98%), Postives = 79/97 (81.44%), Query Frame = -1
Query:  193 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 483
            MA YK+KL G  G +   +  +DQYILDAAEE G+DLPYSCRAGACSTCAGK+ +GSVDQSD SFLDD+Q+  G++LTC++YPTSDC I +H+EE L
Sbjct:    1 MATYKVKLSG-EGVDKTIDCPDDQYILDAAEEQGIDLPYSCRAGACSTCAGKVAAGSVDQSDQSFLDDSQIGDGFVLTCVAYPTSDCTILTHQEEGL 96          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER2_SPIOL (Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.447e-32
Identity = 64/96 (66.67%), Postives = 79/96 (82.29%), Query Frame = -1
Query:  193 AVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 480
            A YK+ L+ P+G +   E  +D+YILDAAEE G+DLPYSCRAGACS+CAGK+ SGSVDQSD SFL+D QME G++LTCI+YPT D  I++HKEEEL
Sbjct:    1 ATYKVTLVTPSGSQ-VIECGDDEYILDAAEEKGMDLPYSCRAGACSSCAGKVTSGSVDQSDQSFLEDGQMEEGWVLTCIAYPTGDVTIETHKEEEL 95          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER_ARCLA (Ferredoxin OS=Arctium lappa PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.115e-32
Identity = 67/97 (69.07%), Postives = 83/97 (85.57%), Query Frame = -1
Query:  193 AVYKIKLIGPNGEEHEFEAQEDQYILD-AAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 480
            A YK+ LI P G++ EFE  +D YILD AAEE G DLPYSCRAG+CS+CAGK+ +GSVDQSDGS+LDD+QMEAG++LTC++YPTSD  I++HKEEEL
Sbjct:    1 ATYKVTLITPEGKQ-EFEVPDDVYILDHAAEEVG-DLPYSCRAGSCSSCAGKVTAGSVDQSDGSYLDDDQMEAGWVLTCVAYPTSDVTIETHKEEEL 95          
BLAST of CX675771 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.115e-32
Identity = 65/97 (67.01%), Postives = 83/97 (85.57%), Query Frame = -1
Query:  193 MAVYKIKLIGPNGEEHEFEAQEDQYILDAAEEAGVDLPYSCRAGACSTCAGKLVSGSVDQSDGSFLDDNQMEAGYLLTCISYPTSDCVIQSHKEEEL 483
            MA YK+ LI P+GE   ++A +D+YILD+A +AG DLP SCRAGACSTCAGK+VSG+VDQS+ SFLDD+Q+EAGY+LTCI+YP SD  I+++KEEEL
Sbjct:    1 MATYKVTLITPDGEV-SYDAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
The following BLAST results are available for this feature:
BLAST of CX675771 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
FER_SYNEN1.872e-3263.92Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_SILPR1.872e-3248.67Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_SPIPL2.445e-3265.31Ferredoxin OS=Spirulina platensis PE=1 SV=2[more]
FER_SCEQU2.445e-3265.63Ferredoxin OS=Scenedesmus quadricauda PE=1 SV=1[more]
FER_SAMNI3.194e-3266.67Ferredoxin OS=Sambucus nigra PE=1 SV=1[more]
FER_SYNLI5.447e-3264.95Ferredoxin OS=Synechococcus lividus PE=1 SV=2[more]
FER_GUITH5.447e-3265.98Ferredoxin OS=Guillardia theta GN=petF PE=3 SV=3[more]
FER2_SPIOL5.447e-3266.67Ferredoxin-2 OS=Spinacia oleracea PE=1 SV=1[more]
FER_ARCLA7.115e-3269.07Ferredoxin OS=Arctium lappa PE=1 SV=1[more]
FER1_SYNP27.115e-3267.01Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_64G04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-64G04-M8-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675771 ID=CX675771; Name=CX675771; organism=Citrus sinensis; type=EST; length=729bp
TTTTTTTTGAAATGAAATCCCAAAATGCCAGTAATAGTATAACCAAATGA
AAATTTAAAGATTCCATTGCACAAGACAACACACTGAAATCTAAAAAATA
TTGTAGGTCCATGAGAAACCTTATCGGCATACTCAGGCACTTGATCACAG
TTCATACTTGAAAAACCCTAAATCAACCGACAGTACTCAGCAAAGCTCTT
CTTCCTTGTGAGACTGAATCACGCAATCTGAAGTCGGGTATGAAATGCAA
GTCAGCAGATAACCAGCCTCCATTTGATTGTCATCGAGGAAGGAACCATC
TGACTGGTCAACTGAACCAGACACCAACTTCCCAGCACACGTCGAGCAAG
CACCAGCGCGGCAGGAATAGGGCAGGTCGACTCCTGCTTCCTCAGCTGCA
TCGAGGATGTACTGGTCTTCCTGGGCCTCAAACTCATGCTCTTCACCGTT
AGGTCCAATCAGCTTAATCTTGTAGACAGCCATTGATGCTTGGAAATTGG
GAGAGCATTTCAGGCCAAAGGTCTTGGAGATGCCCTTAACAGACCCAAGT
GAGGATGGGCTCTTGATTAAGTTCCTTGATAGTTGATTTCTGGGTGCAGC
TTTAACCATGCACGGGGCACTAAGTGTCACAGTCGACATCTTTACCCAGA
AAAGCAAGAGATCGAGCGGCGGAACGCGCGAGGTGGCGAGTGGGTTGGTG
GGGTGGCGGTCAAGTGAAATGAATTGCCT
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